diff --git a/figures/publication_figures/README.md b/figures/publication_figures/README.md index 3d48741..60ccf3e 100644 --- a/figures/publication_figures/README.md +++ b/figures/publication_figures/README.md @@ -25,12 +25,11 @@ RETURN * LIMIT 1 ## remake of figure 10 (w/o) RO codes as edge names ## whats up w/ the cl-log2fcbins relationship? +first part ```cypher -match (asd:Concept)-[:CODE]-(asd_code:Code {SAB:'MP'})//,CodeID:'MP:0010403'}) -match (asd)-[:isa]-(opsd:Concept)-[:CODE]-(opsd_code:Code {SAB:'HPO'})//CodeID:'MP:0010404'})//-[r0]-(pt:Term) where pt.name contains 'Flna' +match (asd:Concept)-[:CODE]-(asd_code:Code {CodeID:'MP:0010403'}) +match (asd)-[:isa]-(opsd:Concept)-[:CODE]-(opsd_code:Code {CodeID:'MP:0010404'}) match (opsd)-[:involved_in]-(hcop:Concept)-[:CODE]-(hcop_code:Code {SAB:'HCOP'}) -match (hcop)-[r]-(hgnc:Concept)-[:CODE]-(hgnc_code:Code {SAB:'HGNC'})//-[]-(T:Term) -match (hgnc)-[r1 {SAB:'HMAZ'}]-(cl:Concept)-[:CODE]-(cl_code:Code {SAB:'CL'}) - match (cl)-[r2]-(c:Concept)-[:CODE]-(cc:Code {SAB:'LOG2FCBINS'}) +match (hcop)-[r]-(hgnc:Concept)-[:CODE]-(hgnc_code:Code {SAB:'HGNC'})-[:MTH_ACR]-(T:Term {name:'FLNC gene'}) RETURN * LIMIT 1 ```