From 190df5a6f8421d422c6e3672528a0c13e4df7e55 Mon Sep 17 00:00:00 2001 From: ben stear Date: Sat, 25 Nov 2023 19:29:12 -0500 Subject: [PATCH] Update data_dict.md --- petagraph/data_dict.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/petagraph/data_dict.md b/petagraph/data_dict.md index e2cd90c..a2177e6 100644 --- a/petagraph/data_dict.md +++ b/petagraph/data_dict.md @@ -24,18 +24,18 @@ For clarity, all schema figures in this document follow this node color format: [GTEx, Expression data (GTEXEXP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gtex-expression-data-gtexexp ) [GTEx, eQTL data (GTEXEQTL)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gtex-eqtl-data-gtexeqtl) -[GTEx, Coexpression data (GTEXCOEXP)]() -[GlyGen selected datasets (GLYGEN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#glygen-computational-and-informatics-resources-for-glycoscience-glygen) +[GTEx, Coexpression data (GTEXCOEXP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gtex-coexpression-data-gtexcoexp) +[GlyGen selected datasets (GLYGEN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#glygen-glygen) [Homo Sapiens Chromosomal Location Ontology (HSCLO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#homo-sapiens-chromosomal-location-ontology-hsclo) -[Human gene-to-phenotype mappings (HGNCHPO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-gene-phenotype-hgnchpo) -[Human-to-mouse ortholog mappings (HGNCHCOP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-mouse-orthologs-hgnchcop) -[Human-to-mouse phenotype mappings (HPOMP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-phenotype-ontology-to-mouse-phenotype-mappings-hpomp) -[Human-to-rat ENSEMBL mappings (RATHCOP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-rat-ensembl-orthology-rathcop) +[Human gene-to-phenotype mappings (HGNCHPO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-gene-to-phenotype-mappings-hgnchpo) +[Human-to-mouse ortholog mappings (HGNCHCOP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-to-mouse-ortholog-mappings-hgnchcop) +[Human-to-mouse phenotype mappings (HPOMP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-to-mouse-phenotype-mappings-hpomp) +[Human-to-rat ENSEMBL mappings (RATHCOP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-to-rat-ensembl-mappings-rathcop) [LINCS L1000 (LINCS)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#lincs-l1000-lincs) -[Molecular Signatures Database (MSIGDB)]() +[Molecular Signatures Database (MSIGDB)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#molecular-signatures-database-msigdb) [Mouse gene-to-phenotype mappings (HCOPMP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#mouse-gene-phenotype-hcopmp) [Single Cell Fetal Heart data (ASP2019)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#single-cell-fetal-heart-expression-data-asp2019) -[STRING (STRING)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#string) +[STRING (STRING)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#string-string) @@ -365,7 +365,7 @@ return * limit 1 --- -## Single Cell Fetal Heart data (ASP2019) +## STRING (STRING) **Source**: We ingested human protein to protein interaction data from the STRING website. To download the file, navigate to the STRING download page [here](https://string-db.org/cgi/download?sessionId=bhAGIM6ZbBmX) and select Homo Sapiens in the drop down box. Then download the 9606.protein.links.full.v12.0 file.