diff --git a/.github/workflows/publish.yaml b/.github/workflows/publish.yaml
index 8d8a195..68e2c13 100644
--- a/.github/workflows/publish.yaml
+++ b/.github/workflows/publish.yaml
@@ -79,7 +79,9 @@ jobs:
         run: |
           python src/render_sfinx_toc.py
           cp ./_toc.yml ./pythia/
-          cp ./notebooks/*.ipynb ./pythia/notebooks/
+          cp ./Makefile ./pythia/
+          cp ./chapters/*.yml ./pythia/notebooks/
+          cp -R ./notebooks/*.ipynb ./pythia/notebooks/
           cd ./pythia
           git config --local user.name "$GITHUB_ACTOR"
           git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
diff --git a/Makefile b/Makefile
index a50f195..9589654 100644
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,7 @@
 .ONESHELL:
 SHELL = /bin/bash
 .PHONY: help clean environment kernel post-render data
-YML = $(wildcard chapters/*.yml)
+YML = $(wildcard notebooks/*.yml)
 QMD = $(wildcard chapters/*.qmd)
 REQ = $(basename $(notdir $(YML)))
 CONDA_ENV_DIR := $(foreach i,$(REQ),$(shell conda info --base)/envs/$(i))
diff --git a/chapters/01_classification.yml b/notebooks/01_classification.yml
similarity index 100%
rename from chapters/01_classification.yml
rename to notebooks/01_classification.yml
diff --git a/chapters/02_floodmapping.yml b/notebooks/02_floodmapping.yml
similarity index 100%
rename from chapters/02_floodmapping.yml
rename to notebooks/02_floodmapping.yml