diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 8e34d936..4da4194a 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -151631,7 +151631,7 @@ - MAM02184e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000003989 or ENSG00000103257 or ENSG00000123643 or ENSG00000139514 or ENSG00000149150 or ENSG00000155465 or ENSG00000165349 or ENSG00000167703" + - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000103257 or ENSG00000123643 or ENSG00000149150 or ENSG00000155465 or ENSG00000167703" - rxnFrom: "HMRdatabase" - references: "PMID:12930836;PMID:16288981;PMID:911815;PMID:10049700;PMID:10574970;PMID:11389679;PMID:11557028;PMID:11564694;PMID:12824232;PMID:14574404" - subsystem: @@ -151879,7 +151879,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000003989 or ENSG00000072041 or ENSG00000105281 or ENSG00000111371 or ENSG00000115902 or ENSG00000134294 or ENSG00000139209 or ENSG00000139514 or ENSG00000165349 or ENSG00000174358" + - gene_reaction_rule: "ENSG00000072041 or ENSG00000105281 or ENSG00000111371 or ENSG00000115902 or ENSG00000134294 or ENSG00000139209 or ENSG00000174358" - rxnFrom: "HMRdatabase" - references: "PMID:12845534;PMID:10823827;PMID:11452978;PMID:15632147" - subsystem: @@ -151971,7 +151971,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000003989 or ENSG00000072041 or ENSG00000111371 or ENSG00000134294 or ENSG00000139209 or ENSG00000139514 or ENSG00000165349 or ENSG00000168003 or ENSG00000174358" + - gene_reaction_rule: "ENSG00000072041 or ENSG00000111371 or ENSG00000134294 or ENSG00000139209 or ENSG00000168003 or ENSG00000174358" - rxnFrom: "HMRdatabase" - references: "PMID:12930836;PMID:17322374" - subsystem: @@ -152029,7 +152029,7 @@ - MAM02724e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000003989 or ENSG00000111371 or ENSG00000134294 or ENSG00000139209 or ENSG00000139514 or ENSG00000165349 or ENSG00000174358" + - gene_reaction_rule: "ENSG00000134294 or ENSG00000139209 or ENSG00000174358" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -152118,7 +152118,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000079215 or ENSG00000105143 or ENSG00000106688 or ENSG00000110436 or ENSG00000162383 or ENSG00000174358 or ENSG00000178537" + - gene_reaction_rule: "ENSG00000079215 or ENSG00000105143 or ENSG00000106688 or ENSG00000110436 or ENSG00000162383" - rxnFrom: "HMRdatabase" - references: "PMID:10823827" - subsystem: @@ -152469,7 +152469,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117834 or ENSG00000140675 or ENSG00000148942 or ENSG00000154025 or ENSG00000158865" + - gene_reaction_rule: "ENSG00000117834 or ENSG00000140675 or ENSG00000154025 or ENSG00000158865" - rxnFrom: "HMRdatabase" - references: "PMID:12748858" - subsystem: @@ -153598,7 +153598,7 @@ - MAM03089e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153613,7 +153613,7 @@ - MAM03135e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153628,7 +153628,7 @@ - MAM03089e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153643,7 +153643,7 @@ - MAM03089e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153658,7 +153658,7 @@ - MAM03089e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153688,7 +153688,7 @@ - MAM02724e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153703,7 +153703,7 @@ - MAM02724e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153718,7 +153718,7 @@ - MAM02770e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153733,7 +153733,7 @@ - MAM02724e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153748,7 +153748,7 @@ - MAM03135e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153763,7 +153763,7 @@ - MAM02993e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153793,7 +153793,7 @@ - MAM02724e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000165029" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -153883,7 +153883,7 @@ - MAM03101e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257 or ENSG00000188687" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154153,7 +154153,6 @@ - MAM02993e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154168,7 +154167,6 @@ - MAM02770e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154655,7 +154653,6 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154689,7 +154686,6 @@ - MAM02993e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154706,7 +154702,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154774,7 +154770,7 @@ - MAM02896e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902" + - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154791,7 +154787,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154825,7 +154821,7 @@ - MAM02724e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154859,7 +154855,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902" + - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154876,7 +154872,7 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" + - gene_reaction_rule: "ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -154927,7 +154923,6 @@ - MAM03135e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257" - rxnFrom: "HMRdatabase" - references: "PMID:14770309;PMID:14770310" - subsystem: @@ -265350,9 +265345,6 @@ - !!omap - id: "ENSG00000148834" - name: "GSTO1" - - !!omap - - id: "ENSG00000148942" - - name: "SLC5A12" - !!omap - id: "ENSG00000149016" - name: "TUT1" diff --git a/model/genes.tsv b/model/genes.tsv index 67ebb53b..d381dfb3 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -1611,7 +1611,6 @@ "ENSG00000148795" "ENST00000638971;ENST00000638190;ENST00000369887;ENST00000640633;ENST00000638272;ENST00000639393;ENST00000469683;ENST00000489268" "ENSP00000492313;ENSP00000492539;ENSP00000358903;ENSP00000491508;ENSP00000492651" "P05093" "CYP17A1" "1586" "cytochrome P450 family 17 subfamily A member 1" "CPT7;CYP17;P450C17;S17AH" "Endoplasmic reticulum" "SwissProt" "ENSG00000148832" "ENST00000357296;ENST00000278060;ENST00000356306;ENST00000476834;ENST00000480071;ENST00000483211;ENST00000529585;ENST00000368535;ENST00000528127;ENST00000530555" "ENSP00000349847;ENSP00000278060;ENSP00000348654;ENSP00000432737;ENSP00000435514;ENSP00000434550;ENSP00000432517" "Q6QHF9" "PAOX" "196743" "polyamine oxidase" "PAO" "Peroxisome;Nucleus;Cytosol" "SwissProt;CellAtlas" "ENSG00000148834" "ENST00000470554;ENST00000493946;ENST00000369713;ENST00000445155;ENST00000432659;ENST00000539281;ENST00000369710" "ENSP00000358727;ENSP00000406708;ENSP00000405325;ENSP00000441488;ENSP00000358724" "P78417" "GSTO1" "9446" "glutathione S-transferase omega 1" "GSTTLp28;P28" "Cytosol" "SwissProt" -"ENSG00000148942" "ENST00000396005;ENST00000527405;ENST00000280467;ENST00000533617;ENST00000528822" "ENSP00000379326;ENSP00000436011;ENSP00000280467;ENSP00000435053" "Q1EHB4" "SLC5A12" "159963" "solute carrier family 5 member 12" "MGC52019;SMCT2" "Nucleus" "CellAtlas" "ENSG00000149016" "ENST00000308436;ENST00000476907;ENST00000469480;ENST00000463241;ENST00000278279;ENST00000494385;ENST00000478537" "ENSP00000308000;ENSP00000419607;ENSP00000278279;ENSP00000420739;ENSP00000419792" "Q9H6E5" "TUT1" "64852" "terminal uridylyl transferase 1, U6 snRNA-specific" "FLJ21850;FLJ22267;FLJ22347;PAPD2;RBM21;TENT1;TUTase" "Nucleus;Cytosol" "SwissProt;CellAtlas" "ENSG00000149084" "ENST00000278353;ENST00000527433;ENST00000531185;ENST00000636007;ENST00000395700;ENST00000636722;ENST00000637401;ENST00000638034;ENST00000527213;ENST00000532178;ENST00000533090;ENST00000533802;ENST00000534053;ENST00000525736" "ENSP00000278353;ENSP00000490749;ENSP00000436582;ENSP00000490822;ENSP00000379052;ENSP00000490003;ENSP00000490421;ENSP00000490701" "Q53GQ0" "HSD17B12" "51144" "hydroxysteroid 17-beta dehydrogenase 12" "KAR;SDR12C1" "Endoplasmic reticulum" "SwissProt" "ENSG00000149089" "ENST00000532428;ENST00000395787;ENST00000527830" "ENSP00000474191;ENSP00000379133" "Q96GX9" "APIP" "51074" "APAF1 interacting protein" "APIP2;CGI-29;Mmrp19" "Nucleus;Cytosol" "SwissProt;CellAtlas"