From e1f77e47471650a1adafc62d1bd633d6eacf1c9b Mon Sep 17 00:00:00 2001 From: Jiahao Luo <67491919+JHL-452b@users.noreply.github.com> Date: Mon, 30 Dec 2024 18:05:43 +0800 Subject: [PATCH 1/2] Fix: GPR curation for transport reactions (3) --- model/Human-GEM.yml | 65 +++++++++++---------------------------------- model/genes.tsv | 2 -- 2 files changed, 16 insertions(+), 51 deletions(-) diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 8e34d936..89fecc02 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -147989,7 +147989,7 @@ - MAM03134e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000113396 or ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" + - gene_reaction_rule: "ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -148152,7 +148152,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - references: "PMID:16858612" - subsystem: @@ -171079,7 +171078,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000012660 or ENSG00000026652 or ENSG00000100344 or ENSG00000102125 or ENSG00000111684 or ENSG00000123684 or ENSG00000125505 or ENSG00000141446 or ENSG00000143797 or ENSG00000151093 or ENSG00000160216 or ENSG00000169359 or ENSG00000170522 or ENSG00000171320 or ENSG00000176454 or ENSG00000186792 or ENSG00000197977" + - gene_reaction_rule: "ENSG00000151093 or ENSG00000169359 or ENSG00000171320" - rxnFrom: "HMRdatabase" - references: "PMID:14598172;PMID:6361812;PMID:8132483" - subsystem: @@ -174339,7 +174338,6 @@ - MAM01754m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174367,7 +174365,6 @@ - MAM01753m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174381,7 +174378,6 @@ - MAM01753m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174395,7 +174391,6 @@ - MAM01754m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174409,7 +174404,6 @@ - MAM01753m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174423,7 +174417,6 @@ - MAM01645m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174437,7 +174430,6 @@ - MAM01754m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174451,7 +174443,6 @@ - MAM01680m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174479,7 +174470,6 @@ - MAM01645m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174493,7 +174483,6 @@ - MAM01645m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174507,7 +174496,6 @@ - MAM01688m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174535,7 +174523,6 @@ - MAM01754m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174549,7 +174536,6 @@ - MAM01747m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174563,7 +174549,6 @@ - MAM01688m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174577,7 +174562,6 @@ - MAM01688m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174591,7 +174575,6 @@ - MAM01680m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -174605,7 +174588,6 @@ - MAM01642m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -175437,7 +175419,7 @@ - MAM02774x: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130821 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" + - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000185825" - rxnFrom: "HMRdatabase" - references: "PMID:18619829" - subsystem: @@ -175455,7 +175437,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130821 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" + - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000184343 or ENSG00000185825" - rxnFrom: "HMRdatabase" - references: "PMID:18619829" - subsystem: @@ -175473,7 +175455,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130821 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" + - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" - rxnFrom: "HMRdatabase" - references: "PMID:18619829" - subsystem: @@ -175491,7 +175473,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130821 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" + - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130822 or ENSG00000185825" - rxnFrom: "HMRdatabase" - references: "PMID:18619829" - subsystem: @@ -175509,7 +175491,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130821 or ENSG00000130822 or ENSG00000184343 or ENSG00000185825" + - gene_reaction_rule: "ENSG00000067829 or ENSG00000067840 or ENSG00000101986 or ENSG00000130822 or ENSG00000185825" - rxnFrom: "HMRdatabase" - references: "PMID:18619829" - subsystem: @@ -175811,7 +175793,7 @@ - MAM02819x: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169;PMID:18305372" - subsystem: @@ -177267,7 +177249,6 @@ - MAM01365l: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000123643" - rxnFrom: "HMRdatabase" - references: "PMID:17466261;PMID:7718542;PMID:10049700;PMID:10072483;PMID:10391915;PMID:10574970;PMID:11004451;PMID:11311135;PMID:11389679;PMID:11557028;PMID:11564694;PMID:11742812;PMID:11827462;PMID:12117417;PMID:12824232;PMID:14574404;PMID:14770310;PMID:7690540;PMID:9751058;PMID:9759917;PMID:12883891;PMID:16288981;PMID:1904693;PMID:4424190;PMID:6432599;PMID:9868191;PMID:15465786;PMID:16082501" - subsystem: @@ -177305,7 +177286,6 @@ - MAM01628l: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000123643" - rxnFrom: "HMRdatabase" - references: "PMID:911815" - subsystem: @@ -177447,7 +177427,7 @@ - MAM03101l: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000104044 or ENSG00000123643" + - gene_reaction_rule: "ENSG00000104044" - rxnFrom: "HMRdatabase" - references: "PMID:12930836;PMID:16288981;PMID:911815;PMID:10049700;PMID:10574970;PMID:11389679;PMID:11557028;PMID:11564694;PMID:12824232;PMID:14574404" - subsystem: @@ -179350,7 +179330,7 @@ - MAM03114g: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117620 or ENSG00000130958 or ENSG00000205060" + - gene_reaction_rule: "ENSG00000205060" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -179634,7 +179614,6 @@ - MAM01588g: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000107819" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -180088,7 +180067,7 @@ - MAM01252g: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000152779 or ENSG00000165449 or ENSG00000174327" + - gene_reaction_rule: "ENSG00000174327" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -180185,7 +180164,7 @@ - MAM03114g: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117620 or ENSG00000130958 or ENSG00000205060" + - gene_reaction_rule: "ENSG00000130958" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -188603,7 +188582,6 @@ - MAM02039e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000135917" - rxnFrom: "Recon3D" - references: "PMID:14770311;PMID:15623830" - subsystem: @@ -192898,7 +192876,6 @@ - MAM02403m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000103569" - rxnFrom: "Recon3D" - eccodes: "2.3.1.21" - references: "PMID:12096044;PMID:16126913;PMID:9733774" @@ -211283,7 +211260,6 @@ - MAM02770e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000115902" - rxnFrom: "Recon3D" - references: "PMID:14502423;PMID:11824937" - subsystem: @@ -211960,7 +211936,6 @@ - MAM02319e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149150 or ENSG00000167703" - rxnFrom: "Recon3D" - subsystem: - "Transport reactions" @@ -212902,7 +212877,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000005471 or ENSG00000023839 or ENSG00000103222 or ENSG00000114770 or ENSG00000118777 or ENSG00000121270 or ENSG00000125257" + - gene_reaction_rule: "ENSG00000023839 or ENSG00000103222 or ENSG00000114770 or ENSG00000118777 or ENSG00000125257" - rxnFrom: "Recon3D" - subsystem: - "Transport reactions" @@ -236985,7 +236960,6 @@ - MAM02763e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000085563" - rxnFrom: "Recon3D" - references: "PMID:15290871" - subsystem: @@ -237557,7 +237531,6 @@ - MAM02823e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000112759 or ENSG00000174669" - rxnFrom: "Recon3D" - references: "PMID:20956085" - subsystem: @@ -237775,7 +237748,7 @@ - MAM01417e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000015520 or ENSG00000073060 or ENSG00000135218" + - gene_reaction_rule: "ENSG00000073060 or ENSG00000135218" - rxnFrom: "Recon3D" - subsystem: - "Transport reactions" @@ -242644,7 +242617,7 @@ - MAM03512e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000023839 or ENSG00000073734 or ENSG00000108846 or ENSG00000125257" + - gene_reaction_rule: "ENSG00000023839 or ENSG00000108846 or ENSG00000125257" - rxnFrom: "Recon3D" - references: "PMID:25210150;PMID:26579438;PMID:23506869" - subsystem: @@ -242660,7 +242633,7 @@ - MAM03512e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000111700 or ENSG00000134538 or ENSG00000163959 or ENSG00000186198" + - gene_reaction_rule: "ENSG00000111700 or ENSG00000134538" - rxnFrom: "Recon3D" - references: "PMID:25210150;PMID:26579438" - subsystem: @@ -262020,9 +261993,6 @@ - !!omap - id: "ENSG00000102100" - name: "SLC35A2" - - !!omap - - id: "ENSG00000102125" - - name: "TAZ" - !!omap - id: "ENSG00000102144" - name: "PGK1" @@ -263220,9 +263190,6 @@ - !!omap - id: "ENSG00000117600" - name: "PLPPR4" - - !!omap - - id: "ENSG00000117620" - - name: "SLC35A3" - !!omap - id: "ENSG00000117643" - name: "MAN1C1" diff --git a/model/genes.tsv b/model/genes.tsv index 67ebb53b..50480c3c 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -515,7 +515,6 @@ "ENSG00000102043" "ENST00000374852;ENST00000478487;ENST00000462447;ENST00000461403" "ENSP00000363985" "Q96EF0" "MTMR8" "55613" "myotubularin related protein 8" "FLJ20126" "Nucleus" "SwissProt" "ENSG00000102078" "ENST00000543953;ENST00000612248;ENST00000495156;ENST00000464342;ENST00000464184;ENST00000424447;ENST00000545805;ENST00000218197;ENST00000467496;ENST00000339231;ENST00000361980;ENST00000478474;ENST00000467346;ENST00000471795;ENST00000465988" "ENSP00000445225;ENSP00000477981;ENSP00000402578;ENSP00000444642;ENSP00000218197;ENSP00000342797;ENSP00000354455" "O95258" "SLC25A14" "9016" "solute carrier family 25 member 14" "BMCP1;UCP5" "Mitochondria" "CellAtlas" "ENSG00000102100" "ENST00000635285;ENST00000247138;ENST00000635460;ENST00000376529;ENST00000635628;ENST00000376521;ENST00000445167;ENST00000413561;ENST00000376515;ENST00000635589;ENST00000616181;ENST00000452555;ENST00000446885;ENST00000635238;ENST00000634665;ENST00000635015;ENST00000376512;ENST00000634461" "ENSP00000489484;ENSP00000247138;ENSP00000489339;ENSP00000365712;ENSP00000489613;ENSP00000365704;ENSP00000402726;ENSP00000393233;ENSP00000365698;ENSP00000489197;ENSP00000478617;ENSP00000416002;ENSP00000415518;ENSP00000489515;ENSP00000489356;ENSP00000489089;ENSP00000365695;ENSP00000489440" "P78381" "SLC35A2" "7355" "solute carrier family 35 member A2" "UGALT;UGAT;UGT;UGT1;UGT2;UGTL" "Golgi apparatus" "SwissProt;CellAtlas" -"ENSG00000102125" "ENST00000613634;ENST00000612460;ENST00000601016;ENST00000613002;ENST00000652682;ENST00000475699;ENST00000615986;ENST00000617701;ENST00000620808;ENST00000615658;ENST00000614595;ENST00000612012;ENST00000652476;ENST00000369776;ENST00000621647;ENST00000652685;ENST00000439735;ENST00000616020;ENST00000476800;ENST00000652358;ENST00000652390;ENST00000483674;ENST00000426231;ENST00000483780;ENST00000476679;ENST00000652354;ENST00000479875;ENST00000470127;ENST00000652644;ENST00000494912;ENST00000498029;ENST00000651139" "ENSP00000481037;ENSP00000469981;ENSP00000478154;ENSP00000498288;ENSP00000419854;ENSP00000480133;ENSP00000481645;ENSP00000479311;ENSP00000482070;ENSP00000358791;ENSP00000398193;ENSP00000483636;ENSP00000498464;ENSP00000498858;ENSP00000406257;ENSP00000498734;ENSP00000498940;ENSP00000498496;ENSP00000498957" "Q16635" "TAZ" "6901" "tafazzin" "BTHS;CMD3A;EFE;EFE2;G4.5;TAZ1;XAP-2" "Cytosol;Inner mitochondria" "SwissProt" "ENSG00000102144" "ENST00000644362;ENST00000477335;ENST00000491291;ENST00000373316;ENST00000474281;ENST00000476531" "ENSP00000496140;ENSP00000362413" "P00558" "PGK1" "5230" "phosphoglycerate kinase 1" "" "Cytosol" "SwissProt" "ENSG00000102172" "ENST00000404933;ENST00000379404;ENST00000478094;ENST00000457085" "ENSP00000385746;ENSP00000368714;ENSP00000407366" "P52788" "SMS" "6611" "spermine synthase" "MRSR;SPMSY;SpS;SRS" "Cytosol;Nucleus" "CellAtlas" "ENSG00000102226" "ENST00000478596;ENST00000377107;ENST00000469080;ENST00000377080;ENST00000377078;ENST00000489111;ENST00000489030;ENST00000480104;ENST00000488848;ENST00000497179;ENST00000467378;ENST00000218348" "ENSP00000366311;ENSP00000366282;ENSP00000366279;ENSP00000218348" "P51784" "USP11" "8237" "ubiquitin specific peptidase 11" "UHX1" "Nucleus;Cytosol" "SwissProt;CellAtlas" @@ -909,7 +908,6 @@ "ENSG00000117592" "ENST00000340385;ENST00000460950;ENST00000470017" "ENSP00000342026" "P30041" "PRDX6" "9588" "peroxiredoxin 6" "1-Cys;aiPLA2;AOP2;KIAA0106;MGC46173;NSGPx;p29;PRX" "Cytosol;Lysosome" "SwissProt;CellAtlas" "ENSG00000117594" "ENST00000615289;ENST00000261465;ENST00000367027;ENST00000367028" "ENSP00000478430;ENSP00000261465;ENSP00000355994;ENSP00000355995" "P28845" "HSD11B1" "3290" "hydroxysteroid 11-beta dehydrogenase 1" "HSD11;HSD11B;SDR26C1" "Endoplasmic reticulum" "SwissProt" "ENSG00000117600" "ENST00000370185;ENST00000457765;ENST00000370184" "ENSP00000359204;ENSP00000394913" "Q7Z2D5" "PLPPR4" "9890" "phospholipid phosphatase related 4" "KIAA0455;LPPR4;PHP1;PRG-1" "Cell membrane" "DeepLoc2" -"ENSG00000117620" "ENST00000638371;ENST00000533028;ENST00000427993;ENST00000639221;ENST00000638336;ENST00000639807;ENST00000640715;ENST00000465289;ENST00000640726;ENST00000639994;ENST00000638988;ENST00000640178;ENST00000640360;ENST00000640732;ENST00000638929;ENST00000640600;ENST00000639088;ENST00000638338;ENST00000638876;ENST00000370155;ENST00000370153;ENST00000532693;ENST00000422078;ENST00000639148" "ENSP00000491146;ENSP00000433849;ENSP00000414947;ENSP00000492169;ENSP00000491145;ENSP00000490964;ENSP00000492801;ENSP00000418527;ENSP00000492128;ENSP00000492135;ENSP00000492681;ENSP00000491771;ENSP00000491598;ENSP00000492771;ENSP00000491789;ENSP00000492308;ENSP00000491533;ENSP00000491185;ENSP00000359174;ENSP00000359172;ENSP00000436938;ENSP00000491383" "Q9Y2D2" "SLC35A3" "23443" "solute carrier family 35 member A3" "" "Golgi apparatus" "SwissProt" "ENSG00000117643" "ENST00000374332;ENST00000611903;ENST00000263979;ENST00000473891;ENST00000374329;ENST00000496532;ENST00000475314;ENST00000487493" "ENSP00000363452;ENSP00000482317;ENSP00000263979;ENSP00000363449" "Q9NR34" "MAN1C1" "57134" "mannosidase alpha class 1C member 1" "HMIC" "Golgi apparatus;Nucleus" "SwissProt;CellAtlas" "ENSG00000117682" "ENST00000434391;ENST00000427245;ENST00000527611;ENST00000374186;ENST00000525682;ENST00000236342;ENST00000526219;ENST00000374185;ENST00000487944;ENST00000360009;ENST00000533087;ENST00000531312;ENST00000525165;ENST00000525326;ENST00000525546;ENST00000528557;ENST00000526278;ENST00000436153;ENST00000529688;ENST00000530781;ENST00000531955;ENST00000525410;ENST00000430232;ENST00000431933;ENST00000416052" "ENSP00000403529;ENSP00000399177;ENSP00000434984;ENSP00000236342;ENSP00000434219;ENSP00000363300;ENSP00000353104;ENSP00000436119;ENSP00000436764;ENSP00000434185;ENSP00000431407;ENSP00000433976;ENSP00000405604;ENSP00000433491;ENSP00000397584;ENSP00000399781;ENSP00000393961" "Q86SQ9" "DHDDS" "79947" "dehydrodolichyl diphosphate synthase subunit" "DS;FLJ13102;hCIT;HDS;RP59" "Endoplasmic reticulum" "SwissProt" "ENSG00000117834" "ENST00000425816;ENST00000533824;ENST00000438567;ENST00000236495;ENST00000493837;ENST00000441260;ENST00000527929;ENST00000525901;ENST00000532322;ENST00000471020" "ENSP00000404982;ENSP00000431900;ENSP00000401730;ENSP00000236495;ENSP00000399991;ENSP00000431196" "Q2M3M2" "SLC5A9" "200010" "solute carrier family 5 member 9" "SGLT4" "Cytosol" "CellAtlas" From 21400800751dbf82bd599c1972fcb7a7f1cd63ef Mon Sep 17 00:00:00 2001 From: JHL-452b Date: Mon, 30 Dec 2024 10:49:37 +0000 Subject: [PATCH 2/2] chore: add macaw test result --- data/testResults/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/testResults/README.md b/data/testResults/README.md index 24c52291..4e381ab0 100644 --- a/data/testResults/README.md +++ b/data/testResults/README.md @@ -4,7 +4,7 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/ The test results shown here were obtained by the GitHub Actions run in: -- **PR #830** (MACAW) +- **PR #953** (MACAW) - **PR #883** (gene essentiality) The results will be updated by any subsequent pull request. Summary results are shown as a comment in the corresponding pull request.