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setup-r.md

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Setup R

cbdgen is a software that operates with various packages produced by the open-source community, one of these packages is the complexity package ECoL, which is responsible to analyze a complexity of a dataset. This is a package built in R and then it is necessary that our framework based in python must recognize this package. A way to do that is to use a conversion package from Python to R, in this case we use rpy2 which can be installed using pip, but before installing using pip, we must have all the development kit from R Language, thus is necessary to install r-base and add it to your PATH.

Disclaimer: This tutorial is based in Linux-Debian systems, such as ubuntu. In case if you are a Windows user, try with CRAN: https://cran.r-project.org/bin/windows/base/.

  1. Update your package manager

    sudo apt-get update

  2. Install r-base

    sudo apt -y install r-base

  3. Verify if r-base is configured successfully in your PATH

    user@Ubuntu:~$ R

    If a R environment is prompted, then you successfully configured R to your PATH.