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europe-custom.yaml.lock
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install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mimodd_main
owner: wolma
revisions:
- f0f2795de2c7
tool_panel_section_label: MiModD
- name: dwt_var_perfeature
owner: devteam
revisions:
- 7a15159140d1
tool_panel_section_label: Statistics
- name: bedtools
owner: iuc
revisions:
- 07e8b80f278c
- 0a5c785ac6db
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- b28e0cfa7ba1
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- fe5b4cb8356c
tool_panel_section_label: BED
- name: pizzly
owner: iuc
revisions:
- 91ef4a171202
- f7556cfa4047
tool_panel_section_label: RNA Analysis
- name: mlocarna
owner: rnateam
revisions:
- 59055c49a112
tool_panel_section_label: RNA Analysis
- name: rcas
owner: rnateam
revisions:
- aa9579837a2e
tool_panel_section_label: RNA Analysis
- name: paralyzer
owner: rnateam
revisions:
- 4dbe81be8b81
tool_panel_section_label: RNA Analysis
- name: ebi_search_rest_results
owner: iuc
revisions:
- 42d5e40fcd0b
tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
owner: iuc
revisions:
- a1ef6c88ee37
- e2e9fae080ad
tool_panel_section_label: Get Data
- name: transformation
owner: ethevenot
revisions:
- d9e05021553c
tool_panel_section_label: Metabolomics
- name: anova
owner: lecorguille
revisions:
- bcd05315efc5
tool_panel_section_label: Statistics
- name: heatmap
owner: ethevenot
revisions:
- db1d80e89156
tool_panel_section_label: Metabolomics
- name: univariate
owner: ethevenot
revisions:
- 140290de7986
tool_panel_section_label: Metabolomics
- name: multivariate
owner: ethevenot
revisions:
- e91de3b04320
tool_panel_section_label: Metabolomics
- name: biosigner
owner: ethevenot
revisions:
- b2414be87d4b
tool_panel_section_label: Metabolomics
- name: probmetab
owner: mmonsoor
revisions:
- 52b222a626b0
tool_panel_section_label: Annotation
- name: lcmsmatching
owner: prog
revisions:
- fb9c0409d85c
tool_panel_section_label: Metabolomics
- name: add_input_name_as_column
owner: mvdbeek
revisions:
- b31219f26a8f
tool_panel_section_label: Text Manipulation
- name: taxonomy_krona_chart
owner: crs4
revisions:
- 020b3087d0b7
tool_panel_section_label: Metagenomic Analysis
- name: text_processing
owner: bgruening
revisions:
- 20344ce0c811
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
revisions:
- 626658afe4cb
tool_panel_section_label: Text Manipulation
- name: uniprotxml_downloader
owner: galaxyp
revisions:
- e1abc9a35c64
tool_panel_section_label: Get Data
- name: sra_tools
owner: iuc
revisions:
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tool_panel_section_label: Get Data
- name: ega_download_streamer
owner: yhoogstrate
revisions:
- 3e2cccf08053
tool_panel_section_label: Get Data
- name: dorina
owner: rnateam
revisions:
- 6986169fa312
tool_panel_section_label: Get Data
- name: dbbuilder
owner: galaxyp
revisions:
- a85fbebe8b2f
tool_panel_section_label: Get Data
- name: unipept
owner: galaxyp
revisions:
- 34758ab8aaa4
tool_panel_section_label: Get Data
- name: prinseq
owner: iuc
revisions:
- 02befcb391f5
- 1ee282794de3
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tool_panel_section_label: FASTA/FASTQ
- name: add_value
owner: devteam
revisions:
- 745871c0b055
tool_panel_section_label: Text Manipulation
- name: split_file_on_column
owner: bgruening
revisions:
- 90b52d8d6f2c
tool_panel_section_label: Text Manipulation
- name: merge_cols
owner: devteam
revisions:
- f2aac0c5c60d
tool_panel_section_label: Text Manipulation
- name: text_processing
owner: bgruening
revisions:
- 20344ce0c811
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
revisions:
- 626658afe4cb
tool_panel_section_label: Text Manipulation
- name: coverage
owner: devteam
revisions:
- bc9c66c1e9c9
tool_panel_section_label: Text Manipulation
- name: regex_replace
owner: kellrott
revisions:
- 9a77d5fca67c
tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
owner: devteam
revisions:
- 82fa5062d611
tool_panel_section_label: Text Manipulation
- name: merge
owner: devteam
revisions:
- 0926c81f382c
tool_panel_section_label: Text Manipulation
- name: intersect
owner: devteam
revisions:
- 8ddabc73af92
tool_panel_section_label: Text Manipulation
- name: flanking_features
owner: devteam
revisions:
- 8307665c4b6c
tool_panel_section_label: Text Manipulation
- name: join
owner: devteam
revisions:
- ffbd1de29c28
tool_panel_section_label: Text Manipulation
- name: cluster
owner: devteam
revisions:
- 765ceb06c3e2
tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
owner: devteam
revisions:
- 4cd116158aef
tool_panel_section_label: Text Manipulation
- name: complement
owner: devteam
revisions:
- e0a23ab32d7f
tool_panel_section_label: Operate on Genomic Intervals
- name: subtract
owner: devteam
revisions:
- 7a2a604ae9c8
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
revisions:
- 0a3e3133b09d
tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
owner: devteam
revisions:
- 960d5d114184
tool_panel_section_label: Text Manipulation
- name: sed_wrapper
owner: bjoern-gruening
revisions:
- 12ac67b5c81d
tool_panel_section_label: Text Manipulation
- name: unique
owner: bgruening
revisions:
- 7ce75adb93be
tool_panel_section_label: Text Manipulation
- name: dna_filtering
owner: devteam
revisions:
- 549d2cb4c6f2
tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
owner: bgruening
revisions:
- f18f67056946
tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
owner: peterjc
revisions:
- fb1313d79396
tool_panel_section_label: Filter and Sort
- name: find_in_reference
owner: jjohnson
revisions:
- c4fd2ea4f988
tool_panel_section_label: Filter and Sort
- name: sample_seqs
owner: peterjc
revisions:
- 02c13ef1a669
tool_panel_section_label: Filter and Sort
- name: collection_column_join
owner: iuc
revisions:
- 071084070619
- 3ddd99c7efee
- 58228a4d58fe
- 9c8536c7ed42
- dfde09461b1e
tool_panel_section_label: Join, Subtract and Group
- name: subtract
owner: devteam
revisions:
- 7a2a604ae9c8
tool_panel_section_label: Operate on Genomic Intervals
- name: bam_to_scidx
owner: iuc
revisions:
- 11fc60f0e942
- 408520e1ae1a
- b737f6d83f48
tool_panel_section_label: Convert Formats
- name: map_peptides_to_bed
owner: galaxyp
revisions:
- 78b8213e122d
tool_panel_section_label: Convert Formats
- name: idconvert
owner: galaxyp
revisions:
- edb33e8224c6
tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
owner: iuc
revisions:
- 08b6255afde7
- 4eb3cc1f8466
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tool_panel_section_label: Convert Formats
- name: uniprot_rest_interface
owner: bgruening
revisions:
- 48522382b6a4
tool_panel_section_label: Convert Formats
- name: bigwig_to_bedgraph
owner: bgruening
revisions:
- 3799012ce2ff
tool_panel_section_label: Convert Formats
- name: gffread
owner: devteam
revisions:
- 0232f19d300f
tool_panel_section_label: Convert Formats
- name: msconvert
owner: galaxyp
revisions:
- dd4ba10d0c45
tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
owner: devteam
revisions:
- 0b4e36026794
tool_panel_section_label: FASTA/FASTQ
- name: fasta_to_tabular
owner: devteam
revisions:
- 7e801ab2b70e
tool_panel_section_label: FASTA/FASTQ
- name: fastqtofasta
owner: devteam
revisions:
- 723b5b38d88a
tool_panel_section_label: FASTA/FASTQ
- name: fastq_to_fasta
owner: devteam
revisions:
- 186b8d913e6c
tool_panel_section_label: FASTA/FASTQ
- name: length_and_gc_content
owner: iuc
revisions:
- 2ca1baabdae0
- e3ba567abdf5
- f088370d2a3c
tool_panel_section_label: Extract Features
- name: extract_genomic_dna
owner: iuc
revisions:
- 5cc8e93ee98f
- 8dd8e89c0603
- c8467246b57e
- e1f5bdd8279c
- e400dcbc60d0
tool_panel_section_id: fetch_sequences___alignments
- name: concat
owner: devteam
revisions:
- d491589307e7
tool_panel_section_label: Operate on Genomic Intervals
- name: complement
owner: devteam
revisions:
- e0a23ab32d7f
tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
owner: devteam
revisions:
- 765ceb06c3e2
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
revisions:
- 0a3e3133b09d
tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
owner: devteam
revisions:
- 3b33da018e74
tool_panel_section_label: Operate on Genomic Intervals
- name: numeric_clustering
owner: bgruening
revisions:
- a3fd214e7555
tool_panel_section_label: Statistics
- name: t_test_two_samples
owner: devteam
revisions:
- c2ffc9885b5a
tool_panel_section_label: Statistics
- name: seq_composition
owner: peterjc
revisions:
- c0eb0e5792f3
tool_panel_section_label: Statistics
- name: plot_from_lda
owner: devteam
revisions:
- 08affc5d2aef
tool_panel_section_label: Statistics
- name: mine
owner: devteam
revisions:
- 5e2c89443c44
tool_panel_section_label: Statistics
- name: lda_analysis
owner: devteam
revisions:
- f0b6217f4a0c
tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
owner: devteam
revisions:
- 04cdbd00dcec
tool_panel_section_label: Statistics
- name: count_gff_features
owner: devteam
revisions:
- fabda887a71f
tool_panel_section_label: Statistics
- name: correlation
owner: devteam
revisions:
- 24e01abf9e34
tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
owner: iuc
revisions:
- 0fba45ac3987
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tool_panel_section_label: Graph/Display Data
- name: jbrowse
owner: iuc
revisions:
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tool_panel_section_label: Graph/Display Data
- name: venn_list
owner: peterjc
revisions:
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tool_panel_section_label: Graph/Display Data
- name: mummer
owner: peterjc
revisions:
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tool_panel_section_label: Graph/Display Data
- name: karyotype_plot
owner: guru-ananda
revisions:
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tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
owner: devteam
revisions:
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tool_panel_section_label: Graph/Display Data
- name: scatterplot
owner: devteam
revisions:
- efda9a4a50e7
tool_panel_section_label: Graph/Display Data
- name: histogram
owner: devteam
revisions:
- cdb9e89e2970
tool_panel_section_label: Graph/Display Data
- name: gmaj
owner: devteam
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