quip-pathdb.yml

version: '3'

services:
  mongo:
    image: mongo:4.2-bionic
    container_name: ca-mongo
    restart: unless-stopped
    volumes:
      - ./db:/data/db
  iip:
    image: camicroscope/iipimage:version-3.11.0
    container_name: ca-iip
    restart: unless-stopped
    volumes:
      - ./images/:/data/images/
  back:
    build:
      context: "https://github.com/camicroscope/caracal.git#v3.12.0"
      args:
        viewer: "v3.12.0"
    depends_on:
      - "mongo"
    ports:
      - "4010:4010"
    container_name: ca-security
    volumes:
      - ./keys/:/src/keys/
      - ./config/routes_pathdb.json:/src/routes.json
    environment:
      JWK_URL: "https://www.googleapis.com/oauth2/v3/certs"
      IIP_PATH: "http://ca-iip:8080/fcgi-bin/iipsrv.fcgi"
      MONGO_URI: "mongodb://ca-mongo"
      DEFAULT_USER_TYPE: "Editor"
      DISABLE_SEC: "true"
      DISABLE_CSP: "true"
  pathdb:
    build:
      context: "https://github.com/SBU-BMI/PathDB.git#2.0.0"
      args:
        viewer: "v3.11.1"
    container_name: quip-pathdb
    restart: unless-stopped
    ports: ["443:443","80:80"]
    volumes:
      - ./data:/data/
      - ./images/:/data/pathdb/files/wsi
      - ./config/pathdb:/quip/web/sites/default
      - ./jwt_keys/:/keys/
      - ./config:/config
    command:
      - /config/pathdb_pre.sh
  imageloader:
    build: "https://github.com/SBU-BMI/ImageLoader.git#3.0.0"
    container_name: quip-imageloader
    volumes:
      - ./data:/data/
      - ./images:/data/images
  segloader:
    build: "https://github.com/SBU-BMI/SegmentationLoader.git#2.1"
    container_name: quip-segloader
    volumes:
      - ./data:/data
  heatmaploader:
    build: "https://github.com/SBU-BMI/uploadHeatmaps.git#v1.5.5"
    container_name: quip-hmloader
    volumes:
      - ./data:/mnt/data/
    environment:
      - TZ=America/New_York
      - DEBIAN_FRONTEND=noninteractive