diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/io/HttpUtils.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/io/HttpUtils.java index 41160675..d31d596b 100644 --- a/src/main/java/edu/ucsf/rbvi/stringApp/internal/io/HttpUtils.java +++ b/src/main/java/edu/ucsf/rbvi/stringApp/internal/io/HttpUtils.java @@ -103,7 +103,7 @@ public static JSONObject postJSON(String url, Map queryMap, String args = HttpUtils.getStringArguments(queryMap); manager.info("URL: " + url + "?" + truncate(args)); - System.out.println("URL: " + url + "?" + truncate(args)); + // System.out.println("URL: " + url + "?" + truncate(args)); // System.out.println("URL: " + url + "?" + args); URLConnection connection = null; diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ImportNetworkTaskFactory.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ImportNetworkTaskFactory.java index 2714a4a5..e2b7f77a 100644 --- a/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ImportNetworkTaskFactory.java +++ b/src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ImportNetworkTaskFactory.java @@ -49,18 +49,18 @@ public ImportNetworkTaskFactory(final StringNetwork stringNet, final String spec public TaskIterator createTaskIterator() { if (stringIds == null) { - System.out.println("Calling LoadSpeciesInteractions"); + //System.out.println("Calling LoadSpeciesInteractions"); return new TaskIterator( new LoadSpeciesInteractions(stringNet, speciesName, species, confidence, species.getName(), useDATABASE, netType)); } else if (stringNet.getNetwork() == null) { - System.out.println("Calling LoadInteractions"); + //System.out.println("Calling LoadInteractions"); return new TaskIterator(new LoadInteractions(stringNet, speciesName, species, confidence, additionalNodes, stringIds, queryTermMap, netName, useDATABASE, netType)); } - System.out.println("Calling LoadTermsTask"); + //System.out.println("Calling LoadTermsTask"); return new TaskIterator(new LoadTermsTask(stringNet, speciesName, species, confidence, additionalNodes, stringIds, queryTermMap, useDATABASE, netType)); } diff --git a/src/main/java/edu/ucsf/rbvi/stringApp/internal/utils/ModelUtils.java b/src/main/java/edu/ucsf/rbvi/stringApp/internal/utils/ModelUtils.java index 2e8accc2..dc1dc6d7 100644 --- a/src/main/java/edu/ucsf/rbvi/stringApp/internal/utils/ModelUtils.java +++ b/src/main/java/edu/ucsf/rbvi/stringApp/internal/utils/ModelUtils.java @@ -1360,7 +1360,7 @@ private static CyNode createNodeFromStringDb(CyNetwork network, String id, Strin CyRow row = network.getRow(newNode); nodeMap.put(id, newNode); - System.out.println("Creating node "+id); + // System.out.println("Creating node "+id); row.set(CyNetwork.NAME, id); // row.set(CyRootNetwork.SHARED_NAME, stringId); diff --git a/stringApp-2.0.2.jar b/stringApp-2.1.0.jar similarity index 80% rename from stringApp-2.0.2.jar rename to stringApp-2.1.0.jar index a7a09e7c..f0402307 100644 Binary files a/stringApp-2.0.2.jar and b/stringApp-2.1.0.jar differ