notebooks.yml

# This file is managed by 'repo_helper'. Don't edit it directly.
---
name: notebooks rerender

on:
  push:
    branches: ["master"]

jobs:
  Run:
    name: "notebooks"
    runs-on: "ubuntu-latest"

    steps:
      - name: Checkout 🛎️
        uses: "actions/checkout@v2"

      - name: Setup Python 🐍
        uses: "actions/setup-python@v2"
        with:
          python-version: "3.8"

      - name: Install dependencies 🔧
        run: |
          sudo apt-get update
          sudo apt-get install pandoc
          python -VV
          python -m site
          python -m pip install --upgrade pip setuptools wheel
          python -m pip install nbformat nbconvert jupyter-client ipykernel domdf_python_tools
          python -m pip install -r requirements.txt
          python -m pip install .

      - name: "Change to Notebooks branch"
        run: git checkout -b Notebooks

      - name: "Setup work dir"
        run: |
          git config --global user.email "dominic@davis-foster.co.uk"
          git config --global user.name "Dominic Davis-Foster"
        working-directory: demo/jupyter

      - name: Display structure of work dir
        run: ls -R
        working-directory: demo/jupyter

      - name: "Render notebooks"
        run: |
          for file in *.ipynb; do
            jupyter nbconvert --clear-output --inplace "$file"
            jupyter nbconvert --to notebook --inplace --execute "$file"
          done
        working-directory: demo/jupyter

      - name: "Regenerate reStructuredText files"
        run: python3 notebook2rst.py

# TODO: regenerate scripts using notebook2script

      - name: "Remove execution times"
        working-directory: demo/jupyter
        run: |
          cat > remove_execution_times.py <<EOF
          #!/usr/bin/env/python3
          import json
          from domdf_python_tools.paths import PathPlus

          for filename in PathPlus.cwd().glob("*.ipynb"):
          	notebook = filename.load_json()
          	for cell in notebook["cells"]:
          		if "execution" in cell["metadata"]:
          			cell["metadata"]["execution"] = {}
          		if "pycharm" in cell["metadata"]:
          			del cell["metadata"]["pycharm"]
          	filename.write_clean(json.dumps(notebook, indent=1).replace("/home/runner/work/PyMassSpec-Plot/", ''))

          EOF

          python3 remove_execution_times.py

      - name: "Stage, commit and push"
        run: |
          for file in demo/jupyter/*.ipynb; do
            git stage "$file"
          done

          for file in doc-source/demo_rst/*.rst; do
            git stage "$file"
          done

          for file in doc-source/examples/graphics/*.png; do
            git stage "$file"
          done

          git commit -m "Re-rendered Jupyter Notebooks"
          git push --set-upstream origin Notebooks --force