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subset of reads during conversion #5

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hasindu2008 opened this issue Aug 12, 2023 · 2 comments
Open

subset of reads during conversion #5

hasindu2008 opened this issue Aug 12, 2023 · 2 comments

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@hasindu2008
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Hey @Psy-Fer,

This enhancement request [https://github.com/hasindu2008/slow5tools/issues/69] from @mbhall88 for slow5tools could not be honoured because of the amount of effort required to implement such a feature due to the complexity of the FAST5 handling code. Could you please evaluate how feasible this is in blue-crab when doing POD5->BLOW5 conversion?

@Psy-Fer
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Psy-Fer commented Aug 12, 2023

Hey,

Yea so is the input just a flat file of read_ids

Then they are the only reads you want converted?
So kind of a get->convert in one step?

@mbhall88
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Correct 👍

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