ontology_detail |
obi |
Ontology for Biomedical Investigations |
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label |
url |
BioPortal Browser |
BioPortal |
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| email |
github |
label |
orcid |
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bpeters42 |
Bjoern Peters |
0000-0002-8457-6693 |
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An integrated ontology for the description of life-science and clinical investigations |
investigations |
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1 |
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OBI |
| id |
title |
description |
obi.owl |
OBI |
The full version of OBI in OWL format |
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| id |
title |
description |
obi.obo |
OBI in OBO |
The OBO-format version of OBI |
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| id |
title |
description |
obi/obi_core.owl |
OBI Core |
A collection of important high-level terms and their relations from OBI and other ontologies |
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| id |
title |
description |
obi/obi-base.owl |
OBI Base module |
Base module for OBI |
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| id |
title |
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The Ontology for Biomedical Investigations |
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| description |
examples |
user |
The Immune Epitope Database (IEDB) is funded by NIAID that catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. |
| description |
url |
A specific assay curated in the IEDB using the OBI:1110180 '3H-thymidine assay measuring epitope specific proliferation of T cells' ('3H-thymidine') |
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examples |
user |
ENCODE is a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. |
| description |
url |
A specific assay annotated in ENCODE using OBI:0000716 'ChiP-seq' |
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examples |
user |
The NASA GeneLab data repository hosts space biology and space-related datasets funded by multiple space agencies around the world. |
| description |
url |
A specific assay annotated in NASA GeneLab using OBI:0001271 'RNA-seq assay' |
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| description |
examples |
user |
The CFDE is providing a centralized metadata resource to allow search across data coordination centers from multiple Common Fund programs. |
| description |
url |
OBI is used in CFDE to captures types of experiments with assay terms such as OBI:0003094 'fluorescence in-situ hybridization assay' |
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examples |
user |
NIF is a dynamic inventory of Web-based neuroscience resources, data, and tools accessible via any computer connected to the Internet. |
| description |
url |
A specific OBI term used to autocomplete in NIF search OBI:0100026 'organism' |
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active |
