ci.yml

name: CI for push and PR
on: [push, pull_request]
jobs:
  check-internal-links:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - uses: ruby/setup-ruby@v1
        with:
          ruby-version: "3.0"
      - name: Install dependencies
        run: |
          gem install bundler
          bundle install
      - name: Build website
        run: bundle exec jekyll build --strict_front_matter
      - name: Validate HTML and check links
        run: |
          bundle exec htmlproofer \
            --allow_missing_href=true \
            --ignore-urls "/.*localhost.*/","/.*gitter\.im.*/" \
            --enforce-https=false  \
            --disable-external=true \
            --ignore_empty_alt=true \
            --ignore_missing_alt=true \
            --check-internal-hash=false \
            ./_site
  lint:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.8', '3.11']
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install tox
      run: python -m pip install 'tox>=1.8.0'
    - name: Lint
      run: tox -e lint
  test-other-workflows:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2.2.0
        with:
          activate-environment: ols-website
          environment-file: environment.yml
      - name: Update Open Seeds schedule
        shell: bash -el {0}
        run: |
          bash bin/openseeds/update_schedule.sh
      - name: Update Open Seeds library
        shell: bash -el {0}
        run: |
          python bin/prepare_website_data.py buildlibrary -p "openseeds"
      - name: Update Nebula schedule
        shell: bash -el {0}
        run: |
          bash bin/nebula/update_schedule.sh
      - name: Update people data artifacts
        shell: bash -el {0}
        run: |
          python bin/prepare_website_data.py extractfullpeopledata
      - name: Update Open Seeds library artifacts
        shell: bash -el {0}
        run: |
          python bin/prepare_website_data.py extractlibrary -p "openseeds"
      - name: Update Open Seeds projects
        shell: bash -el {0}
        run: |
          python bin/prepare_website_data.py createprojecttable -p "openseeds"
      - name: Update bibliography
        shell: bash -el {0}
        env:
          ZOTERO_API: ${{ secrets.ZoteroAPI }}
        run: |
          python bin/prepare_website_data.py updatebibliography -a "$ZOTERO_API"