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Release new KG that uses human UniProt identifiers for nodes instead of species non-specific Protein Ontology identifiers #88

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bill-baumgartner opened this issue Jun 17, 2021 · 1 comment
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Release new KG that uses human UniProt identifiers for nodes instead of species non-specific Protein Ontology identifiers #88

bill-baumgartner opened this issue Jun 17, 2021 · 1 comment
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The aim of this proposal is to improve integration of the Text Mining Provider's KGs with the rest of the Translator ecosystem for reasons described in #81. We note that this is not an ideal solution as the gene/protein mentions that have been identified in text are not necessarily human, however for the near term this appears to be an acceptable solution as discussed during the mini-hackathon on 6/17, and noted in NCATSTranslator/minihackathons#14.
@bill-baumgartner bill-baumgartner added incoming status - This issue has been submitted and is awaiting approval/triage accepted status - this issue has been approved/accepted and will will be addressed and removed incoming status - This issue has been submitted and is awaiting approval/triage labels Jun 17, 2021
@bill-baumgartner
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Open question regarding protein/gene conflation: Should this KG also include HGNC identifiers so that genes can be linked in the text-mined assertions as well? Or should there be a separate KG that uses HGNC identifiers for its nodes?

@bill-baumgartner bill-baumgartner mentioned this issue Jun 22, 2021
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