NAMESPACE

# Generated by roxygen2: do not edit by hand

export(TES)
export(TSS)
export(annotate_segments)
export(binarize_bam)
export(binarize_bed)
export(bins)
export(cells)
export(compare_models)
export(counts)
export(emission)
export(emissions_file)
export(enrichment_files)
export(get_frequency)
export(get_width)
export(learn_model)
export(likelihood)
export(markers)
export(model)
export(model_file)
export(overlap)
export(overlap_files)
export(plot_heatmap)
export(read_bam_file)
export(read_bins_file)
export(read_cellmark_file)
export(read_chromsize_file)
export(read_emissions_file)
export(read_enrichment_file)
export(read_model_file)
export(read_overlap_file)
export(read_segements_file)
export(read_transitions_file)
export(segment)
export(segments_files)
export(states)
export(tidy_ranges)
export(transition)
export(transitions_file)
exportClasses(segmentation)
exportMethods(show)
import(chromhmmData)
import(methods)
importFrom(ChIPseeker,annotatePeak)
importFrom(ChIPseeker,as.GRanges)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapList)
importFrom(ComplexHeatmap,add_heatmap)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,bindROWS)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,tileGenome)
importFrom(GenomicRanges,width)
importFrom(IRanges,mergeByOverlaps)
importFrom(S4Vectors,'values<-')
importFrom(S4Vectors,values)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,rowRanges)
importFrom(bamsignals,bamCount)
importFrom(graphics,barplot)
importFrom(stats,aggregate)
importFrom(stats,cor)
importFrom(utils,count.fields)
importFrom(utils,read.delim)
importFrom(utils,stack)