4. tutorial on GECCO based analysis of BGCs from Cutibacterium avidum and Cutibacterium acnes

Overview

This tutorial uses the testing dataset of 7 genomes belonging to the species Cutibacterium avidum and Cutibacterium acnes, which are common species on the healthy human skin. As you will see, these genomes do not have a ton of predicted BGCs and so it should run in 10-20 minutes using just 4 threads.

Download input dataset

# get the input dataset
wget https://github.com/Kalan-Lab/lsaBGC-Pan/raw/main/test_case.tar.gz

# uncompress it
tar -zcvf test_case.tar.gz 

Part 1:

Run