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Write tests for GetVisitPlaceOfService #38

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github-actions bot opened this issue Nov 6, 2022 · 0 comments
Open

Write tests for GetVisitPlaceOfService #38

github-actions bot opened this issue Nov 6, 2022 · 0 comments
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good first issue Good for newcomers tests Testing of functions or features todo Bot-added TODO

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github-actions bot commented Nov 6, 2022

Only needs one or two tests; may be difficult to test as I do not think Eunomia has anything other than missing

#= TODO: Write tests for GetVisitPlaceOfService

end

#= TODO: Write tests for GetVisitPlaceOfService
Only needs one or two tests; may be difficult to test as I do not think Eunomia has anything other than missing
labels: tests, good first issue
assignees: VarshC
=#

"""
GetVisitPlaceOfService(visit_ids, conn; tab = visit_occurrence, join_tab = care_site)

Given a list of visit IDs, find their place of service 

# Arguments:

- `visit_ids` - list of `visit_id`'s; each ID must be of subtype `Integer`

- `conn` - database connection using DBInterface

# Keyword Arguments:

- `tab` - the `SQLTable` representing the Condition Occurrence table; default `visit_occurrence`

- `join_tab` - the `SQLTable` representing the Person table; default `care_site`

# Returns

- `df::DataFrame` - a two column `DataFrame` comprised of columns: `:visit_occurrence_id` and `:condition_concept_id`
"""
function GetVisitPlaceOfService(
    visit_ids,
    conn;
    tab=visit_occurrence,
    join_tab=care_site
)

    df = DBInterface.execute(conn, GetVisitPlaceOfService(visit_ids; tab=tab, join_tab=join_tab)) |> DataFrame

    return df

end

"""
GetVisitPlaceOfService(visit_ids; tab = visit_occurrence, join_tab = care_site)

Produces SQL statement that, given a list of visit IDs, find their place of service 

# Arguments:

- `visit_ids` - list of `visit_id`'s; each ID must be of subtype `Integer`

# Keyword Arguments:

- `tab` - the `SQLTable` representing the Condition Occurrence table; default `visit_occurrence`

- `join_tab` - the `SQLTable` representing the Person table; default `care_site`

# Returns

- `sql::String` - Prepared SQL statement as a `String`
"""
function GetVisitPlaceOfService(
    visit_ids;
    tab=visit_occurrence,
    join_tab=care_site
)

    sql =
        From(tab) |>
        Where(Fun.in(Get.visit_occurrence_id, visit_ids...)) |>
        Select(Get.visit_occurrence_id, Get.care_site_id) |>
        Join(:join => join_tab, Get.care_site_id .== Get.join.care_site_id) |>
        Select(Get.visit_occurrence_id, Get.join.place_of_service_concept_id) |> 
        q -> render(q, dialect=dialect)

    return String(sql)

end

export GetDatabasePersonIDs, GetPatientState, GetPatientGender, GetPatientRace, GetPatientAgeGroup, GetPatientVisits, GetMostRecentConditions, GetMostRecentVisit, GetVisitCondition, GetPatientEthnicity, GetDatabaseYearRange, GetVisitPlaceOfService
@github-actions github-actions bot added good first issue Good for newcomers tests Testing of functions or features todo Bot-added TODO labels Nov 6, 2022
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