Pipelines for downloading and preparing different types of TCGA and TARGET data for analyses using the TCGAbiolinks R package:
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TCGAbiolinks_transcriptome_profiling_data pipeline for processing HARMONIZED transcriptome profiling data
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TCGAbiolinks_gene_expression_data pipeline for processing LEGACY gene expression data
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TCGAbiolinks_DNA_methylation_data pipeline for processing HARMONIZED DNA methylation data