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Failed Test #166
Comments
tried rebuildin sharpy:
Some of these libraries may not be found correctly. |
conda is up to date, i am on archlinux |
i tried cmake with deactivated conda environment, i get the same warning:
Some of these libraries may not be found correctly. |
Dear x3oo, there seems to be a problem with the setup of the conda environment.
Thank you |
i did try to reinstall it according to the seps in the documentation with the same effect. Name : anaconda git status nothing to commit, working tree clean |
git status nothing to commit, working tree clean |
vtk is supposedly missing but its explicitly listed in environment_linux.yml. |
there seems to be a problem with my anaconda install, will try to fix |
(sharpy_env) [buttermelted@thinkpad sharpy]$ rm -rf build/ |
libstdc++.so.6 is really missing in those subdirectories, there must be dependecy conflicts in sharpy, i am using the master branch |
(sharpy_env) [buttermelted@thinkpad sharpy]$ conda update --all Package Planenvironment location: /home/buttermelted/.conda/envs/sharpy_env The following packages will be downloaded:
The following NEW packages will be INSTALLED: _openmp_mutex pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu The following packages will be UPDATED: apptools pkgs/main/linux-64::apptools-4.4.0-py~ --> pkgs/main/noarch::apptools-5.1.0-pyhd3eb1b0_0 The following packages will be SUPERSEDED by a higher-priority channel: _libgcc_mutex conda-forge --> pkgs/main The following packages will be DOWNGRADED: configobj 5.0.6-py37_1 --> 5.0.6-py37h06a4308_1 Proceed ([y]/n)? Downloading and Extracting Packages
|
trying rebuild sharpy after conda update |
so i updated conda with conda update -all, like you see above, then i tried to rebuild sharpy and i still get the same messages. |
(sharpy_env) [buttermelted@thinkpad sharpy]$ sharpy During handling of the above exception, another exception occurred: Traceback (most recent call last): During handling of the above exception, another exception occurred: Traceback (most recent call last): Do you have vtk installed properly? (sharpy_env) [buttermelted@thinkpad sharpy]$ |
Hi, it is usually not a good idea to update the conda environment like that. Can you please try to remove it (conda env remove --name sharpy_env) and create it from scratch again? Best regards. |
(sharpy_env) [buttermelted@thinkpad sharpy]$ conda list --show-channel-urls packages in environment at /home/buttermelted/.conda/envs/sharpy_env:Name Version Build Channel_libgcc_mutex 0.1 main conda-forge |
(sharpy_env) [buttermelted@thinkpad sharpy]$ conda install jsoncpp=1.8.4 Package Planenvironment location: /home/buttermelted/.conda/envs/sharpy_env added / updated specs: The following packages will be UPDATED: ca-certificates 2020.6.24-0 --> 2021.7.5-h06a4308_1 Proceed ([y]/n)? Preparing transaction: done |
(sharpy_env) [buttermelted@thinkpad sharpy]$ git pull
|
tried installing mkl and suddenly cmake is spewing warnings: cmake [options] Specify a source directory to (re-)generate a build system for it in the Run 'cmake --help' for more information. (sharpy_env) [buttermelted@thinkpad sharpy]$ cmake . Package Planenvironment location: /home/buttermelted/.conda/envs/sharpy_env added / updated specs: The following packages will be downloaded:
The following NEW packages will be INSTALLED: mkl anaconda/linux-64::mkl-2020.2-256 The following packages will be SUPERSEDED by a higher-priority channel: ca-certificates pkgs/main::ca-certificates-2021.7.5-h~ --> anaconda::ca-certificates-2020.10.14-0 Proceed ([y]/n)? Downloading and Extracting Packages
Some of these libraries may not be found correctly. -- Looking for Fortran sgemm - found
Some of these libraries may not be found correctly. CMake Warning at lib/UVLM/CMakeLists.txt:11 (add_library):
Some of these libraries may not be found correctly. -- Generating done |
Dear x3oo,
Best regards, Arturo. |
sharpy_env) [buttermelted@thinkpad build]$ cmake ..
Some of these libraries may not be found correctly. CMake Warning at lib/UVLM/CMakeLists.txt:11 (add_library):
Some of these libraries may not be found correctly. -- Generating done |
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call |
(base) [buttermelted@thinkpad ~]$ find .conda/envs/sharpy_env/ -name libstdc++.so.6 |
thank you for your help, this is getting exhaustive, i will try to install anaconda manually |
tried rebuilding anaconda myself. |
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest now it does look like a mistake in conda |
OSError: /home/buttermelted/bin/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so) |
Ive installed anaconda3 through the official installer. and then installed sharpy according to instructions and still get the same error. [buttermelted@thinkpad ~]$ conda activate ==> WARNING: A newer version of conda exists. <== Please update conda by running
Downloading and Extracting Packages To activate this environment, use$ conda activate sharpy_envTo deactivate an active environment, use$ conda deactivate(base) [buttermelted@thinkpad utils]$ conda activate sharpy_env
|
[buttermelted@thinkpad build]$ find /home/buttermelted/bin2/anaconda3/envs/ -name libstdc |
i think its an error inside the sharpy packages |
[buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6 | grep GLIBCXX_3.4.28 |
there is a dependency issue in sharpy |
i need a newer version of glibcxx |
(sharpy_env) [buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6.0.28 | grep GLIBCXX_3.4.29 |
Dear x3oo, I am sorry to hear that you have problems with the libraries. Sadly, I cannot provide you support with this. I would suggest using sharpy on another machine or in a virtual machine. We are using it on CentOS and Ubuntu 20 and it works. Otherwise, I would suggest you to look for solutions online like, for example:
Best regards, Arturo. |
vtk seems to be installed now and its only libstdcc remaining, |
i am going to use docker, |
I close this issue because it is not strictly related to SHARPy. |
thats just wishful thinking on your side, if its an upstream issue you will get the same problem at a later point in time. |
Dear x3oo, |
From your first post at the beginning: Either you recompile scipy locally with gcc11 or you compile sharpy with gcc9 (thats what i did) |
Thank you very much. archlinux is an upstream distribution, everything that hasnt much to do with the OS should work or its a current issue/bug in the package. |
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
running unittest
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version
GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version
GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEEE.EEEEEEEEEEEsE.EE./home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/h5py/_hl/dataset.py:541: DeprecationWarning: Passing None into shape arguments as an alias for () is deprecated.
arr = numpy.ndarray(selection.mshape, dtype=new_dtype)
...EE..........E.E
ERROR: sharpy.generators (unittest.loader._FailedTest)
ImportError: Failed to import test module: sharpy.generators
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/generators/init.py", line 25, in
generator_interface.generators[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/generators/gridbox.py", line 6, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)
ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/linearbeam.py", line 7, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)
ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/aerogridplot.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)
ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 82, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.
======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/bin/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Case and results from:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)
Case from R. Simpson's PhD thesis.
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Hodges result for Euler+Nonlinear is
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/bin/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)
ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1
======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)
ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1
======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/bin/sharpy/tests/linear/goland_wing/output'
======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: tests.linear.rom.test_springmasssystem (unittest.loader._FailedTest)
ImportError: Failed to import test module: tests.linear.rom.test_springmasssystem
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_springmasssystem.py", line 10, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)
ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1
======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/utils/test_generate_cases.py", line 81, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.
======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'
Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org
Ran 40 tests in 1.356s
FAILED (errors=25, skipped=1)
a lot of missing files and packages
The text was updated successfully, but these errors were encountered: