WARNING: Cannot find/read the manifest file /AndroidManifest.xml

[tokit3mx]

┌──(kali㉿kali)-[~/deoptfuscator/deoptfuscator]
└─$ python3 deoptfuscator.py /home/kali/file.apk 
Picked up _JAVA_OPTIONS: -Dawt.useSystemAAFontSettings=on -Dswing.aatext=true
I: Using Apktool 2.9.3 on file.apk
I: Copying raw resources...
I: Copying raw manifest...
I: Copying raw classes.dex file...
I: Copying raw classes2.dex file...
I: Copying raw classes3.dex file...
I: Copying raw classes4.dex file...
I: Copying raw classes5.dex file...
I: Copying raw classes6.dex file...
I: Copying assets and libs...
I: Copying unknown files...
I: Copying original files...
I: Copying META-INF/services directory
.apk/classes4.dex
location : True
.apk/classes4.dex
WARNING: Cannot find/read the manifest file /AndroidManifest.xml
terminate called after throwing an instance of 'boost::wrapexcept<std::ios_base::failure[abi:cxx11]>'
  what():  failed opening file: No such file or directory: iostream error
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(+0x8bbeab)[0x55d294abbeab]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_Z23crash_backtrace_handleri+0x8)[0x55d294abc9d8]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c510)[0x7f43ab37b510]
/lib/x86_64-linux-gnu/libc.so.6(+0x8a0fc)[0x7f43ab3c90fc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f43ab37b472]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f43ab3654b2]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa09db)[0x7f43ab6a09db]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xaffaa)[0x7f43ab6affaa]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb0015)[0x7f43ab6b0015]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb0268)[0x7f43ab6b0268]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0xfb13)[0x7f43abaebb13]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x13b11)[0x7f43abaefb11]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x14281)[0x7f43abaf0281]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x143de)[0x7f43abaf03de]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x14962)[0x7f43abaf0962]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(_ZN5boost9iostreams18mapped_file_source9open_implERKNS0_24basic_mapped_file_paramsINS0_6detail4pathEEE+0x110)[0x7f43abaf0c30]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_ZN9DexLoader14get_dex_headerEPKc+0xf4)[0x55d294af8a64]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_Z23load_dex_magic_from_dexB5cxx11PKc+0x3a)[0x55d294af8bda]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(+0x867556)[0x55d294a67556]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(main+0x33f)[0x55d2945fb30f]
/lib/x86_64-linux-gnu/libc.so.6(+0x276ca)[0x7f43ab3666ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f43ab366785]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_start+0x2a)[0x55d294609fca]
Aborted
$TOOLS/redex-all .apk/const/const.dex -o .apk/const
mv: cannot stat '.apk/const/classes.dex': No such file or directory
.apk/classes3.dex
location : True
.apk/classes3.dex
WARNING: Cannot find/read the manifest file /AndroidManifest.xml
terminate called after throwing an instance of 'boost::wrapexcept<std::ios_base::failure[abi:cxx11]>'
  what():  failed opening file: No such file or directory: iostream error
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(+0x8bbeab)[0x5585910bbeab]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_Z23crash_backtrace_handleri+0x8)[0x5585910bc9d8]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c510)[0x7f9e9cb7b510]
/lib/x86_64-linux-gnu/libc.so.6(+0x8a0fc)[0x7f9e9cbc90fc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f9e9cb7b472]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9e9cb654b2]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa09db)[0x7f9e9cea09db]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xaffaa)[0x7f9e9ceaffaa]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb0015)[0x7f9e9ceb0015]
/lib/x86_64-linux-gnu/libstdc++.so.6(+0xb0268)[0x7f9e9ceb0268]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0xfb13)[0x7f9e9d349b13]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x13b11)[0x7f9e9d34db11]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x14281)[0x7f9e9d34e281]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x143de)[0x7f9e9d34e3de]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(+0x14962)[0x7f9e9d34e962]
/lib/x86_64-linux-gnu/libboost_iostreams.so.1.71.0(_ZN5boost9iostreams18mapped_file_source9open_implERKNS0_24basic_mapped_file_paramsINS0_6detail4pathEEE+0x110)[0x7f9e9d34ec30]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_ZN9DexLoader14get_dex_headerEPKc+0xf4)[0x5585910f8a64]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_Z23load_dex_magic_from_dexB5cxx11PKc+0x3a)[0x5585910f8bda]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(+0x867556)[0x558591067556]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(main+0x33f)[0x558590bfb30f]
/lib/x86_64-linux-gnu/libc.so.6(+0x276ca)[0x7f9e9cb666ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f9e9cb66785]
/home/kali/deoptfuscator/deoptfuscator/tools/redex-all(_start+0x2a)[0x558590c09fca]
Aborted
$TOOLS/redex-all .apk/const/const.dex -o .apk/const
mv: cannot stat '.apk/const/classes.dex': No such file or directory
.apk/classes6.dex
location : True
.apk/classes6.dex
WARNING: Cannot find/read the manifest file /AndroidManifest.xml
...

This goes on for all class files. No idea what is happening. Any ideas or someone has similar/same problem?