diff --git a/installation/sira_env.yml b/installation/sira_env.yml index c8dc753..4f983d1 100644 --- a/installation/sira_env.yml +++ b/installation/sira_env.yml @@ -1,65 +1,27 @@ name: sira_env channels: - - conda-forge - - default + - conda-forge + - nodefaults dependencies: - - pip=21.3.1 - - awscli=1.21.9 - - brewer2mpl=1.4.1 - - codecov=2.1.11 - - colorama=0.4.3 - - configparser=5.0.2 - - coverage=6.1.1 - - docutils=0.15.2 - - freetype=2.10.4 - - graphviz=2.49.1 - - ipython=7.32.0 - - jupyterlab=3.2.1 - - imagecodecs=2021.8.26 - - imageio=2.9.0 - - imagesize=1.2.0 - - latexcodec=2.0.1 - - lmfit=1.0.3 - - matplotlib=3.4.3 - - netcdf4=1.5.8 - - networkx=2.6.3 - - notebook=6.4.5 - - numpy=1.22.2 - - openpyxl=3.0.9 - - pandas=1.3.4 - - parmap=1.5.3 - - pillow=8.3.2 - - pycairo=1.20.1 - - pycparser=2.20 - - pygments=2.10.0 - - pylint=2.11.1 - - pytest=6.2.5 - - pytest-cov=3.0.0 - - python-graphviz=0.17 - - python-igraph=0.9.8 - - python-libarchive-c - - requests=2.26.0 - - s3transfer=0.5.0 - - scikit-image=0.18.3 - - scikit-learn=1.0.1 - - scipy=1.7.1 - - seaborn=0.11.2 - - sqlalchemy=1.4.26 - - xlrd=2.0.1 - - xorg-libxrender=0.9.10 - - xorg-libxpm=3.5.13 - - pip: - - actdiag==2.0.0 - - alabaster==0.7.12 - - blockdiag==2.0.1 - - pybtex==0.22.2 - - pybtex-docutils==0.2.2 - - seqdiag==2.0.0 - - sphinx==3.2.1 - - sphinx-rtd-theme==0.5.0 - - sphinxcontrib-actdiag==2.0.0 - - sphinxcontrib-bibtex==1.0.0 - - sphinxcontrib-blockdiag==2.0.0 - - sphinxcontrib-jsmath==1.0.1 - - sphinxcontrib-seqdiag==2.0.0 - - sphinxcontrib-websupport==1.2.4 + - python=3.11 + - graphviz + - pygraphviz + - python-graphviz + - python-libarchive-c + - imagecodecs + - xorg-libxrender + - xorg-libxpm + - pylatexenc + - python-igraph>=0.11 + - doxygen + - freetype + - numpy + - scipy + - scikit-learn + - umap-learn + - bokeh + - panel + - holoviews + - hvplot + - param + - folium diff --git a/installation/sira_req.txt b/installation/sira_req.txt index 8ff5206..495d7a4 100644 --- a/installation/sira_req.txt +++ b/installation/sira_req.txt @@ -1,65 +1,106 @@ -actdiag==2.0.0 -alabaster==0.7.12 -awscli>=1.20.0 -blockdiag==2.0.1 -botocore~=1.22.0 -brewer2mpl==1.4.1 -colorama>=0.4.3 -configparser==5.0.2 -coveralls +actdiag +alabaster +adjustText +awscli +babel +blockdiag +botocore +brewer2mpl +cairocffi +cartopy +codecov +colorama +colorcet +configparser +contextily coverage[toml] -docutils>=0.15.2 -flake8==4.0.1 -funcparserlib==0.3.5 -graphviz==0.17 -imagecodecs==2022.2.22 -imageio==2.10.1 -imagesize==1.2.0 -ipaddress==1.0.23 -ipython>=8.1.1 -Jinja2>=3.0.2 -jupyterlab>=3.2.1 -latexcodec==2.0.1 -libarchive-c==3.1 -lmfit==1.0.3 -matplotlib==3.4.3 -netcdf4==1.5.8 -networkx==2.6.3 -numpy==1.22.2 -openpyxl>=3.0.9 -pandas==1.3.4 -parmap==1.5.3 -pathlib==1.0.1 -Pillow>=8.4.0 -pybtex==0.24.0 -pybtex-docutils==1.0.1 -pycairo==1.20.1 -pycparser==2.20 -Pygments==2.10.0 -pygraphviz==1.7 -pylint==2.11.1 -pyparsing==3.0.4 -pytest==6.2.5 -pytest-cov==3.0.0 -python-dateutil==2.8.2 -python-igraph>=0.9.0 -pyyaml>=5.4.0 -requests>=2.24.0 -s3transfer>=0.5.0 -scikit-image==0.18.3 -scikit-learn==1.0.1 -scipy==1.7.1 -seaborn==0.11.2 -seqdiag==2.0.0 -Sphinx==4.2.0 -sphinx-rtd-theme==0.5.0 -sphinxcontrib-actdiag==2.0.0 -sphinxcontrib-bibtex==2.4.1 -sphinxcontrib-blockdiag==2.0.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-seqdiag==2.0.0 -sphinxcontrib-websupport==1.2.4 -toml==0.10.2 -tornado==6.1 -xlrd==2.0.1 -pyarrow \ No newline at end of file +dash +dask +dask[dataframe] +decorator +docutils +fiona +flake8 +funcparserlib +geopandas +geoplot +imagecodecs +imageio +imagesize +ipympl +ipython +ipywidgets +Jinja2 +jupyter_bokeh +jupyter-dash +jupyterlab +jupyterlab-katex +katex +kneed +linkify-it-py +lmfit +matplotlib +mdit-py-plugins +mdurl +mpmath +netcdf4 +networkx +nodejs +notebook +numba +openpyxl +oset +pandas +parmap +pillow +pip +plotly +pyarrow +pybtex +pybtex-docutils +pycodestyle +pycparser +pyflakes +pygments +pylint +pyparsing +pyproj +pyqt5-sip +pyqtchart +pyqtwebengine +pytest +pytest-cov +python-dateutil +python-dotenv +pyyaml +requests +s3transfer +seaborn +seqdiag +shapely +Sphinx +sphinxcontrib-actdiag +sphinxcontrib-bibtex +sphinxcontrib-blockdiag +sphinxcontrib-devhelp +sphinxcontrib-htmlhelp +sphinxcontrib-jsmath +sphinxcontrib-qthelp +sphinxcontrib-seqdiag +sphinxcontrib-serializinghtml +sphinxcontrib-websupport +sphinx-rtd-theme +sqlalchemy +sympy +toml +tornado +tqdm +uc-micro-py +utm +webcolors +widgetsnbextension +xlrd +xlsxwriter +xyzservices +yellowbrick +zstandard