ci_tests.yaml

# Test PyGMT on Linux/macOS/Windows
#
# This workflow runs regular PyGMT tests and uploads test coverage reports stored
# in `.coverage.xml` to https://app.codecov.io/gh/GenericMappingTools/pygmt
# via the [Codecov GitHub Action](https://github.com/codecov/codecov-action).
# More codecov related configurations are stored in `.github/codecov.yml`.
# If any tests fail, it also uploads the diff images as workflow artifacts.
#
# It is run:
# 1. on every commit to the main branch
# 2. on every commit to the pull request branches, unless the pull requests only
#    contain non-code changes.
# 3. when a new release is published
#
# It is also scheduled to run daily on the main branch.
#
# In draft pull request, only two jobs on Linux are triggered to save on
# Continuous Integration resources:
#
# - Minimum [NEP29](https://numpy.org/neps/nep-0029-deprecation_policy) Python/NumPy versions
# - Latest Python/NumPy versions + optional packages (e.g. GeoPandas)
#
name: Tests

on:
  push:
    branches: [ main ]
  pull_request:
    types: [opened, reopened, synchronize, ready_for_review]
    paths-ignore:
      - 'doc/**'
      - 'examples/**'
      - '*.md'
      - 'README.rst'
      - 'LICENSE.txt'
      - '.gitignore'
  release:
    types:
      - published
  # Schedule daily tests
  schedule:
    - cron: '0 0 * * *'

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}

jobs:
  test:
    name: ${{ matrix.os }} - Python ${{ matrix.python-version }} / NumPy ${{ matrix.numpy-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.9', '3.11']
        os: [ubuntu-latest, macos-latest, windows-latest]
        # Is it a draft Pull Request (true or false)?
        isDraft:
          - ${{ github.event.pull_request.draft }}
        # Only run two jobs (Ubuntu + Python 3.9/3.11) for draft PRs
        exclude:
          - os: macos-latest
            isDraft: true
          - os: windows-latest
            isDraft: true
        # Pair Python 3.9 with NumPy 1.22 and Python 3.11 with NumPy 1.25
        # Only install optional packages on Python 3.11/NumPy 1.25
        include:
          - python-version: '3.9'
            numpy-version: '1.22'
            optional-packages: ''
          - python-version: '3.11'
            numpy-version: '1.25'
            optional-packages: ' contextily geopandas ipython rioxarray sphinx-gallery'

    timeout-minutes: 30
    defaults:
      run:
        shell: bash -l {0}

    # Environment variables used by codecov
    env:
      OS: ${{ matrix.os }}
      PYTHON: ${{ matrix.python-version }}
      NUMPY: ${{ matrix.numpy-version }}

    steps:
      # Checkout current git repository
      - name: Checkout
        uses: actions/checkout@v3.5.3
        with:
          # fetch all history so that setuptools-scm works
          fetch-depth: 0

      # Install Micromamba with conda-forge dependencies
      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1.4.3
        with:
          environment-name: pygmt
          condarc: |
            channels:
              - conda-forge
              - nodefaults
          cache-downloads: true
          cache-environment: true
          create-args: >-
            python=${{ matrix.python-version }}${{ matrix.optional-packages }}
            gmt=6.4.0
            numpy=${{ matrix.numpy-version }}
            pandas
            xarray
            netCDF4
            packaging
            build
            dvc
            make
            pip
            pytest
            pytest-cov
            pytest-doctestplus
            pytest-mpl

      # Download cached remote files (artifacts) from GitHub
      - name: Download remote data from GitHub
        uses: dawidd6/action-download-artifact@v2.27.0
        with:
          workflow: cache_data.yaml
          workflow_conclusion: success
          name: gmt-cache
          path: .gmt

      # Move downloaded files to ~/.gmt directory and list them
      - name: Move and list downloaded remote files
        run: |
          mkdir -p ~/.gmt
          mv .gmt/* ~/.gmt
          # Change modification times of the two files, so GMT won't refresh it
          touch ~/.gmt/server/gmt_data_server.txt ~/.gmt/server/gmt_hash_server.txt
          ls -lhR ~/.gmt

      # Pull baseline image data from dvc remote (DAGsHub)
      - name: Pull baseline image data from dvc remote
        run: |
          dvc pull --verbose
          ls -lhR pygmt/tests/baseline/

      # Install the package that we want to test
      - name: Install the package
        run: make install

      # Run the regular tests
      - name: Run tests
        run: make test PYTEST_EXTRA="-r P"

      # Upload diff images on test failure
      - name: Upload diff images if any test fails
        uses: actions/upload-artifact@v3
        if: ${{ failure() }}
        with:
          name: artifact-${{ runner.os }}-${{ matrix.python-version }}
          path: tmp-test-dir-with-unique-name

      # Upload coverage to Codecov
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v3.1.4
        with:
          file: ./coverage.xml # optional
          env_vars: OS,PYTHON,NUMPY
          fail_ci_if_error: false