Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merge kfm into rushd #11

Open
kaseylove opened this issue Nov 14, 2023 · 2 comments
Open

Merge kfm into rushd #11

kaseylove opened this issue Nov 14, 2023 · 2 comments
Assignees

Comments

@kaseylove
Copy link
Contributor

No description provided.

@meson800
Copy link
Member

meson800 commented Nov 15, 2023

The current KFM file layout is:

wells:
  - condition_name: A2-A5

Let's change it to use the rushd format, and also possibly let you pick metadata columns/combos of columns.

Something like:

metadata:
  condition:
     - condition_name: A2-A5

@kaseylove
Copy link
Contributor Author

kaseylove commented Aug 12, 2024

  • Allow multiple images per well, z stacks
  • Allow rushd to map images to wells that have been previously kfm'd using unmoved
  • Specify which metadata columns to use in new filename
  • Keep access to kfm on command line
  • Write tests @maryehmann

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants