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Create 'multi-synteny adapter' #4724

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cmdcolin opened this issue Dec 16, 2024 · 0 comments
Open

Create 'multi-synteny adapter' #4724

cmdcolin opened this issue Dec 16, 2024 · 0 comments
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enhancement New feature or request

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@cmdcolin
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Could investigate use of "all vs all" PAF

This is done by e.g.

cat hg19.fa hg38.fa t2t.fa hg002.fa > all.fa
minimap2 all.fa all.fa > all_vs_all.paf

This would be helpful because currently for N assemblies, you could potentially have to load N^2 pairwise comparison tracks
@cmdcolin cmdcolin added the enhancement New feature or request label Dec 16, 2024
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@cmdcolin