Error in SEACR_1.3.sh running

[dhurjhotisaha]

Hi,
I am getting the following error while running SEACR_1.3.sh for my CUT-RUN data. Kindly suggest.

Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") : cannot open file 'PdBn????????????????????????????????????b????????????????????????????????????S????????????????????????????????????d????????????????????????????????????????????????????????????????????????????????????????????????????????????.auc': File name too long
Execution halted

Thanks in advance!
Best
-Dhurjhoti

[ahanden]

SEACR creates a number of temporary files during its run. The filenames are generated on lines 56 and 57 of SEACR_1.3.sh

password=`head /dev/urandom | LC_CTYPE=C tr -dc A-Za-z0-9 | head -c 13; echo ''`
password2=`head /dev/urandom | LC_CTYPE=C tr -dc A-Za-z0-9 | head -c 13; echo ''`

Depending on your operating system, the temporary filenames come out unusable (like what you have). You can replace these lines with something like

password=`mktemp`
password2=`mktemp`