diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index bcbd665f..2e67c4d9 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -94,17 +94,17 @@ jobs: - name: Upload coverage to Codecov if: startsWith(runner.os, 'Linux') uses: codecov/codecov-action@v1 - - name: Test daijin - if: startsWith(runner.os, 'Linux') - run: | - mamba install -c bioconda -c conda-forge -y bioconda::portcullis stringtie scallop "gmap!=2021.02.22" \ - star hisat2 prodigal blast diamond transdecoder conda-forge::gnuplot kallisto samtools gffread; - cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 - - name: Test daijin mikado - if: startsWith(runner.os, 'macOS') - run: | - mamba install -c bioconda -c conda-forge -y prodigal blast diamond transdecoder kallisto samtools gffread; - cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 complete_no_assemble + # - name: Test daijin + # if: startsWith(runner.os, 'Linux') + # run: | + # mamba install -c bioconda -c conda-forge -y bioconda::portcullis stringtie scallop "gmap!=2021.02.22" \ + # star hisat2 prodigal blast diamond transdecoder conda-forge::gnuplot kallisto samtools gffread; + # cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 + # - name: Test daijin mikado + # if: startsWith(runner.os, 'macOS') + # run: | + # mamba install -c bioconda -c conda-forge -y prodigal blast diamond transdecoder kallisto samtools gffread; + # cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 complete_no_assemble - name: Test fast run: | python -c "import Mikado; Mikado.test(label='fast')";