From 5a08738b865c8e4eaab98c2b1181e09bf7b7a7a7 Mon Sep 17 00:00:00 2001 From: sina Date: Sun, 3 Sep 2023 20:41:45 +0200 Subject: [PATCH] release 3sep --- FastOMA/_config.py | 5 +---- FastOMA/collect_subhogs.py | 2 +- README.md | 2 +- 3 files changed, 3 insertions(+), 6 deletions(-) diff --git a/FastOMA/_config.py b/FastOMA/_config.py index 481080c..ea28758 100644 --- a/FastOMA/_config.py +++ b/FastOMA/_config.py @@ -81,10 +81,7 @@ # batch_roothogs big_rhog_filesize_thresh = 600 * 1000 -sum_list_rhogs_filesize_thresh = 1 * 1e5 - -#big_rhog_filesize_thresh = 600 * 1000 -#sum_list_rhogs_filesize_thresh = 2 * 1e6 +sum_list_rhogs_filesize_thresh = 2 * 1e6 # big_rhog_filesize_thresh = 1.6 * 1000 # 600 would be better diff --git a/FastOMA/collect_subhogs.py b/FastOMA/collect_subhogs.py index 8f11cab..db7da50 100644 --- a/FastOMA/collect_subhogs.py +++ b/FastOMA/collect_subhogs.py @@ -60,7 +60,7 @@ def collect_subhogs(): pickle_files_adress = [i for i in pickle_files_adress_raw if i.endswith(".pickle") and i.startswith("file_")] logger_hog.info("number of pickle files is "+str(len(pickle_files_adress))+".") - logger_hog.info("pickle files are " + str(pickle_files_adress) + ".") + logger_hog.debug("pickle files are " + str(pickle_files_adress) + ".") hogs_a_rhog_xml_all = [] for pickle_file_adress in pickle_files_adress: with open(pickle_folder + pickle_file_adress, 'rb') as handle: diff --git a/README.md b/README.md index 45e9346..ceafe23 100644 --- a/README.md +++ b/README.md @@ -216,7 +216,7 @@ You may need to increase the number of opoened files in your system with `ulimit ## Change log -- prelease +- Release v0.1.0: improve nextflow pipeline and outputs. - prelease v.0.0.6: use `--fragment-detection` for `infer-subhogs` and `--low-so-detection --fragment-detection` - prelease v.0.0.6: using input hogmpa - prelease v.0.0.5: adding pip setup.py