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This generates a large number of files similar to these
-rw-rw-r-- 1 user user 1.2G Mar 8 16:37 database_96
-rw-rw-r-- 1 user user 1.2G Mar 8 16:38 database_97
-rw-rw-r-- 1 user user 1.1G Mar 8 16:38 database_98
-rw-rw-r-- 1 user user 1.2G Mar 8 16:38 database_99
and eventually generates a .jdb file
-rw-rw-r-- 1 joshua.theisen joshua.theisen 233G Mar 8 22:42 database.jdb
that gets bigger and bigger until is crashes with the error
db_sort: unable to mmap database.jdb: Cannot allocate memory
I've been experimenting with making the hash size smaller and smaller, to no avail. Is this error because of the hash size? Would the --work-on-disk switch help my situation? Thanks.
The text was updated successfully, but these errors were encountered:
I am trying to build the bacterial library on a cluster with 512GB of RAM using the following code:
This generates a large number of files similar to these
and eventually generates a
.jdb
filethat gets bigger and bigger until is crashes with the error
I've been experimenting with making the hash size smaller and smaller, to no avail. Is this error because of the hash size? Would the
--work-on-disk
switch help my situation? Thanks.The text was updated successfully, but these errors were encountered: