diff --git a/events/galaxy-academy-2024.md b/events/galaxy-academy-2024.md index 7eb0e2b1f33f07..e1a39c3651065d 100644 --- a/events/galaxy-academy-2024.md +++ b/events/galaxy-academy-2024.md @@ -71,6 +71,8 @@ contributions: - by-covid - elixir-europe - mwk + - abromics + - ifb location: @@ -136,7 +138,7 @@ program: - title: Microbiome link: events/tracks/gta2024-micorbiome.md - title: Bacterial Genomics - link: events/tracks/gta2024-bacterial-genomeics.md + link: events/tracks/gta2024-bacterial-genomics.md - title: BY-COVID link: events/tracks/gta2024-bycovid.md - title: Machine Learning diff --git a/events/tracks/gta2024-bacterial-genomeics.md b/events/tracks/gta2024-bacterial-genomeics.md deleted file mode 100644 index c807d749ef8f3c..00000000000000 --- a/events/tracks/gta2024-bacterial-genomeics.md +++ /dev/null @@ -1,34 +0,0 @@ ---- -layout: event-track - -title: Bacterial genomics and AMR detection -description: This learning path aims to teach you the basic steps to detect and check Antimicrobial resistance (AMR) genes in bacterial genomes using Galaxy. - -contributions: - organisers: - - bebatut - - clsiguret - instructors: - - bebatut - - clsiguret - - SaimMomin12 - - EngyNasr - - -program: - - section: "Bacterial genomics and AMR detection" - description: | - If you encounter any issue please ask us in this Slack channel. - tutorials: - - name: quality-contamination-control - topic: sequence-analysis - - name: mrsa-illumina - topic: assembly - - name: bacterial-genome-annotation - topic: genome-annotation - - name: amr-gene-detection - topic: genome-annotation - - name: pathogen-detection-from-nanopore-foodborne-data - topic: microbiome - ---- diff --git a/events/tracks/gta2024-bacterial-genomics.md b/events/tracks/gta2024-bacterial-genomics.md new file mode 100644 index 00000000000000..d8568b5ecf5dab --- /dev/null +++ b/events/tracks/gta2024-bacterial-genomics.md @@ -0,0 +1,44 @@ +--- +layout: event-track +redirect_from: +- /events/tracks/gta2024-bacterial-genomeics + +title: Bacterial genomics and AMR detection +description: This track explains the basic steps to (1) process, assemble, annotate a bacterial genome and (2) detect Antimicrobial resistance (AMR) genes in bacterial genomes using Galaxy. + +contributions: + organisers: + - bebatut + - clsiguret + instructors: + - bebatut + - clsiguret + - SaimMomin12 + - EngyNasr + + +program: + - section: "Bacterial genomics" + description: | + Preparation, assembly and annotation of a bacterial genome. If you encounter any issue please ask us in this Slack channel. + tutorials: + - name: quality-contamination-control + topic: sequence-analysis + - name: mrsa-illumina + topic: assembly + - name: bacterial-genome-annotation + topic: genome-annotation + - section: "AMR detection" + description: | + Detect Antimicrobial resistance (AMR) genes in an assembled bacterial genome. If you encounter any issue please ask us in this Slack channel. + tutorials: + - name: amr-gene-detection + topic: genome-annotation + - section: "Pathogen detection" + description: | + Pathogen detection. If you encounter any issue please ask us in this Slack channel. + tutorials: + - name: pathogen-detection-from-nanopore-foodborne-data + topic: microbiome + +---