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environment.yml
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environment.yml
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name: CRISPR_toolkit
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- anyio=3.6.2=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39hb9d737c_3
- asttokens=2.2.1=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.2=pyha770c72_0
- black=22.6.0=pyhd8ed1ab_0
- bleach=6.0.0=pyhd8ed1ab_0
- bokeh=2.4.3=pyhd8ed1ab_3
- bottleneck=1.3.4=py39hd257fcd_1
- bowtie2=2.2.5=py39h7cff6ad_8
- brotli=1.0.9=h166bdaf_7
- brotli-bin=1.0.9=h166bdaf_7
- brotlipy=0.7.0=py39hb9d737c_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- cachecontrol=0.12.11=pyhd8ed1ab_1
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_3
- click=8.1.3=py39hf3d152e_0
- cloudpickle=2.2.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.2=pyhd8ed1ab_0
- conda=22.11.1=py39hf3d152e_1
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- crispresso2=2.2.8=py39h59fae87_0
- cryptography=39.0.1=py39h079d5ae_0
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.33=py39h227be39_0
- cytoolz=0.12.0=py39hb9d737c_1
- dask=2023.2.0=pyhd8ed1ab_0
- dask-core=2023.2.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- debugpy=1.6.6=py39h227be39_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- distributed=2023.2.0=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.1.0=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- flash=1.2.11=h27826a3_0
- flit-core=3.8.0=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- fonttools=4.33.3=py39hb9d737c_0
- freetype=2.10.4=h0708190_1
- fsspec=2023.1.0=pyhd8ed1ab_0
- h5py=3.8.0=nompi_py39h89bf01e_101
- hdf5=1.14.0=nompi_hb72d44e_102
- hdmedians=0.14.2=py39h2ae25f5_3
- heapdict=1.0.1=py_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_metadata=6.0.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipykernel=6.21.2=pyh210e3f2_0
- ipython=8.9.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.7.3=pyhd8ed1ab_0
- jbig=2.1=h7f98852_2003
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h166bdaf_2
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=8.0.3=pyhd8ed1ab_0
- jupyter_core=5.2.0=py39hf3d152e_0
- jupyter_events=0.6.3=pyhd8ed1ab_0
- jupyter_server=2.3.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.2=py39h295c915_0
- krb5=1.20.1=h81ceb04_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libaec=1.0.6=hcb278e6_1
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=15_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_7
- libbrotlidec=1.0.9=h166bdaf_7
- libbrotlienc=1.0.9=h166bdaf_7
- libcblas=3.9.0=15_linux64_openblas
- libcurl=7.87.0=hdc1c0ab_0
- libdeflate=1.8=h7f8727e_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=15_linux64_openblas
- libmamba=1.3.0=hcea66bb_0
- libmambapy=1.3.0=py39hf0aba66_0
- libnghttp2=1.51.0=hff17c54_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.3.0=h6f004c6_2
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.2=h7f98852_1
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- locket=1.0.0=pyhd8ed1ab_0
- lockfile=0.12.2=py_1
- lz4=4.3.2=py39h724f13c_0
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- mamba=1.3.0=py39hc5d2bb1_0
- markupsafe=2.1.1=py39hb9d737c_1
- matplotlib-base=3.5.2=py39h700656a_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.5=pyhd8ed1ab_0
- mpi=1.0=openmpi
- msgpack-python=1.0.4=py39hf939315_1
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=0.4.3=py39hf3d152e_5
- natsort=8.2.0=pyhd8ed1ab_0
- nbclassic=0.5.2=pyhd8ed1ab_0
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert=7.2.9=pyhd8ed1ab_0
- nbconvert-core=7.2.9=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.9=pyhd8ed1ab_0
- nbformat=5.7.3=pyhd8ed1ab_0
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- notebook=6.5.2=pyha770c72_1
- notebook-shim=0.2.2=pyhd8ed1ab_0
- numexpr=2.8.0=py39h194a79d_102
- numpy=1.22.3=py39hc58783e_2
- olefile=0.46=pyh9f0ad1d_1
- openjdk=8.0.332=h166bdaf_0
- openmpi=4.1.4=ha1ae619_102
- openssl=3.0.8=h0b41bf4_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.3=py39h2ad29b5_0
- pandoc=2.19.2=h32600fe_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- pathspec=0.9.0=pyhd8ed1ab_0
- patsy=0.5.2=pyhd8ed1ab_0
- perl=5.32.1=2_h7f98852_perl5
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=7.2.0=py39h6f3857e_2
- pip=21.2.4=py39h06a4308_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=2.5.1=pyhd8ed1ab_0
- plotly=5.9.0=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- pooch=1.6.0=pyhd8ed1ab_0
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.36=pyha770c72_0
- psutil=5.9.4=py39hb9d737c_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py39hb9d737c_1
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.3=py39h72bdee0_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.2.1=pyhd8ed1ab_0
- python=3.9.16=h2782a2a_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-json-logger=2.0.6=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytz=2022.1=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_5
- pyzmq=25.0.0=py39h0be026e_0
- ray=2.3.1=h105e827_4
- readline=8.1.2=h7f8727e_1
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- requests=2.28.2=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- ruamel.yaml=0.17.21=py39hb9d737c_2
- ruamel.yaml.clib=0.2.7=py39h72bdee0_1
- samtools=1.3.1=0
- scikit-bio=0.5.8=py39h389d5f1_1
- scipy=1.10.0=py39h7360e5f_2
- seaborn=0.11.2=hd8ed1ab_0
- seaborn-base=0.11.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=61.2.0=py39h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- sqlite=3.38.5=hc218d9a_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.2=py39hd257fcd_0
- swifter=1.3.4=pyhd8ed1ab_0
- tblib=1.7.0=pyhd8ed1ab_0
- tenacity=8.0.1=pyhd8ed1ab_0
- terminado=0.17.1=pyh41d4057_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.2=py39hb9d737c_1
- tqdm=4.64.1=pyhd8ed1ab_0
- traitlets=5.9.0=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- typed-ast=1.5.4=py39hb9d737c_0
- typing_extensions=4.3.0=pyha770c72_0
- tzdata=2022a=hda174b7_0
- unicodedata2=14.0.0=py39hb9d737c_1
- urllib3=1.26.14=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- wheel=0.37.1=pyhd3eb1b0_0
- widgetsnbextension=3.6.0=py39hf3d152e_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- zeromq=4.3.4=h9c3ff4c_1
- zict=2.2.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py39h29414ee_1
- zstd=1.5.2=h3eb15da_6
- pip:
- alabaster==0.7.13
- babel==2.11.0
- braceexpand==0.1.7
- charset-normalizer==3.0.1
- docutils==0.19
- imagesize==1.4.1
- snowballstemmer==2.2.0
- sphinx==6.1.3
- sphinxcontrib-applehelp==1.0.4
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==2.0.1
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.5
- zipp==3.12.1