From 6415ad095ef0f1eba87243bcc965562de20cacaa Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Wed, 8 Nov 2023 13:48:39 -0800 Subject: [PATCH] Update dependencies Fix OpenMPI_jll 5 problems --- Project.toml | 2 +- experiments/AMIP/modular/Manifest.toml | 285 +++++++++++++------------ perf/Manifest.toml | 285 +++++++++++++------------ test/Project.toml | 2 +- 4 files changed, 298 insertions(+), 276 deletions(-) diff --git a/Project.toml b/Project.toml index 761dcec110..54a5c2ea63 100644 --- a/Project.toml +++ b/Project.toml @@ -29,7 +29,7 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" [compat] CLIMAParameters = "0.4, 0.5, 0.6, 0.7" ClimaAtmos = "0.16" -ClimaComms = "0.5" +ClimaComms = "0.5.6" ClimaCore = "0.10" ClimaCoreTempestRemap = "0.3" ClimaLSM = "0.3" diff --git a/experiments/AMIP/modular/Manifest.toml b/experiments/AMIP/modular/Manifest.toml index dfc0f5e67e..3c173f28e4 100644 --- a/experiments/AMIP/modular/Manifest.toml +++ b/experiments/AMIP/modular/Manifest.toml @@ -11,9 +11,9 @@ version = "0.2.4" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "d4b99dd70d7136fe75ec74d072191d688448d39c" +git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.2" +version = "0.5.3" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -33,9 +33,9 @@ version = "0.4.4" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -59,9 +59,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -79,17 +79,11 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" +git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.2" +version = "1.4.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -130,9 +124,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "e63330a7d2dcc6245514d9035f4fab798ea6ca74" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.2.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -177,9 +171,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "e1820c154d02ba381e9a91ea7a5870b282d32abc" +git-tree-sha1 = "ffd50a9d2aab03ef016dbd0cb5273c86224b3302" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.7.22" +version = "0.7.25" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -230,10 +224,14 @@ uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAtmos]] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"] @@ -243,15 +241,15 @@ version = "0.16.2" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "88613e2098c9aaf134ac01a2139fac835661bd04" +git-tree-sha1 = "57c054ddd4280ca8e2b5915ef1cf1395c4edbc78" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.5" +version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] -git-tree-sha1 = "c6f1342543def2fbb6d18ea910470a85411dda39" +git-tree-sha1 = "4a5138604b65cfa2d30b90ddf5252106874940c3" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.52" +version = "0.10.55" [[deps.ClimaCorePlots]] deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] @@ -260,13 +258,13 @@ uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" version = "0.2.4" [[deps.ClimaCoreTempestRemap]] -deps = ["ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll", "Test"] -git-tree-sha1 = "12713936cdc28a3442f61d92d782d5bd329ded7e" +deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "31077f7f2845c8d8084a97e4e780c86d2b9a715f" uuid = "d934ef94-cdd4-4710-83d6-720549644b70" -version = "0.3.5" +version = "0.3.10" [[deps.ClimaCoupler]] -deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "OrdinaryDiffEq", "PkgDevTools", "Plots", "PrettyTables", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "TerminalLoggers", "Thermodynamics", "UnPack"] +deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "OrdinaryDiffEq", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "TerminalLoggers", "Thermodynamics", "UnPack"] path = "../../.." uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.0" @@ -279,9 +277,9 @@ version = "0.3.3" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf" +git-tree-sha1 = "40edb50016a5db1a3862dd6e8f76e37c0fbf4f07" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.14" +version = "0.7.15" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -297,9 +295,9 @@ version = "0.14.0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -329,6 +327,12 @@ git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.10" +[[deps.CommonDataModel]] +deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf"] +git-tree-sha1 = "7f5717cbb2c1ce650cfd454451f282df33103596" +uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" +version = "0.2.5" + [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" @@ -367,9 +371,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] @@ -400,9 +404,9 @@ version = "4.1.1" [[deps.CubedSphere]] deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"] -git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f" +git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e" uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" -version = "0.2.3" +version = "0.2.4" [[deps.CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" @@ -477,9 +481,9 @@ version = "6.130.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e" +git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.33.0" +version = "2.33.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -513,18 +517,20 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" +version = "0.25.103" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -555,9 +561,9 @@ version = "1.0.4" [[deps.EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "3250001c57b9a3e18e1e5a257fb9ec2c012286c6" +git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.5.3" +version = "0.6.3" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -652,9 +658,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -917,9 +923,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -936,16 +942,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.35" +version = "0.4.38" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -979,9 +985,9 @@ version = "0.4.1" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" +git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.8" +version = "0.9.12" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1001,9 +1007,9 @@ version = "3.100.1+0" [[deps.LDLFactorizations]] deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "cbf4b646f82bfc58bb48bcca9dcce2eb88da4cd1" +git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.0" +version = "0.10.1" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1012,16 +1018,20 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" +weakdeps = ["BFloat16s"] + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1036,9 +1046,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" @@ -1061,9 +1071,9 @@ version = "0.16.1" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -1168,12 +1178,13 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" version = "2.5.2" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "84bdad5fb1fe03a6637ad413e0e4b7e48ac22be5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.9.2" +version = "2.16.2" [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveEnzymeExt = "Enzyme" @@ -1183,8 +1194,10 @@ version = "2.9.2" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -1194,6 +1207,7 @@ version = "2.9.2" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1221,16 +1235,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] SpecialFunctionsExt = "SpecialFunctions" +[[deps.MKL]] +deps = ["Artifacts", "Libdl", "LinearAlgebra", "MKL_jll"] +git-tree-sha1 = "100521a1d2181cb39036ee1a6955d6b9686bb363" +uuid = "33e6dc65-8f57-5167-99aa-e5a354878fb2" +version = "0.6.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" @@ -1238,10 +1258,10 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2023.2.0+0" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "9dc0c2c256d8b53324770738e54083622f2ca187" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.10" +version = "0.20.18" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1259,9 +1279,9 @@ version = "4.1.2+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] -git-tree-sha1 = "781916a2ebf2841467cda03b6f1af43e23839d85" +git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9" uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" -version = "0.1.9" +version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1290,10 +1310,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1307,9 +1327,9 @@ version = "0.3.2" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" +git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.4+0" +version = "10.1.4+1" [[deps.Missings]] deps = ["DataAPI"] @@ -1336,10 +1356,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.NCDatasets]] -deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "Printf"] -git-tree-sha1 = "17e39eb5bbe564f48bdbefbd103bd3f49fcfcb9b" +deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"] +git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.11.9" +version = "0.12.17" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1372,10 +1392,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "7f5a03e6712f5447c9c344430b8d1927a4777483" +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "072f8371f74c3b9e1b26679de7fbf059d45ea221" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.206+0" +version = "400.902.5+1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -1452,9 +1472,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.0" +version = "6.58.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1463,9 +1483,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c" +git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.25" +version = "0.11.28" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1507,17 +1527,11 @@ deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", " uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" version = "1.9.2" -[[deps.PkgDevTools]] -deps = ["Pkg", "REPL"] -git-tree-sha1 = "1309e483ca06a5d6d1997c0efc62694447947cd1" -uuid = "2afb0842-1d6c-4499-8b39-71b06199676f" -version = "0.1.0" - [[deps.PkgVersion]] deps = ["Pkg"] -git-tree-sha1 = "192aa02cc47f6566c7a1a8907dee76f6eb0a7c90" +git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" -version = "0.2.1" +version = "0.3.3" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1553,9 +1567,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1589,9 +1603,9 @@ version = "1.4.1" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.2.8" [[deps.Printf]] deps = ["Unicode"] @@ -1671,9 +1685,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1745,9 +1759,9 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] @@ -1769,15 +1783,15 @@ version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1805,9 +1819,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4d53b83af904049c493daaf2a225bcae994a3c59" +git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.20" +version = "0.1.23" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveNNlibExt = "NNlib" @@ -1826,20 +1840,14 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1847,9 +1855,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" +git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" +version = "2.11.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1998,9 +2006,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2071,16 +2079,19 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -2099,9 +2110,9 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.0" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2344,15 +2355,15 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 386d4df736..102a9f5400 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -11,9 +11,9 @@ version = "0.2.4" [[deps.AMD]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "d4b99dd70d7136fe75ec74d072191d688448d39c" +git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.2" +version = "0.5.3" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -33,9 +33,9 @@ version = "0.4.4" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -59,9 +59,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -79,17 +79,11 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" +git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.2" +version = "1.4.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -130,9 +124,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "e63330a7d2dcc6245514d9035f4fab798ea6ca74" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.2.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -177,9 +171,9 @@ version = "0.1.2" [[deps.CLIMAParameters]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "e1820c154d02ba381e9a91ea7a5870b282d32abc" +git-tree-sha1 = "ffd50a9d2aab03ef016dbd0cb5273c86224b3302" uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53" -version = "0.7.22" +version = "0.7.25" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -230,10 +224,14 @@ uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.18.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ClimaAtmos]] deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"] @@ -243,15 +241,15 @@ version = "0.16.2" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "88613e2098c9aaf134ac01a2139fac835661bd04" +git-tree-sha1 = "57c054ddd4280ca8e2b5915ef1cf1395c4edbc78" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.5" +version = "0.5.6" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] -git-tree-sha1 = "c6f1342543def2fbb6d18ea910470a85411dda39" +git-tree-sha1 = "4a5138604b65cfa2d30b90ddf5252106874940c3" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.52" +version = "0.10.55" [[deps.ClimaCorePlots]] deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] @@ -260,13 +258,13 @@ uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" version = "0.2.4" [[deps.ClimaCoreTempestRemap]] -deps = ["ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll", "Test"] -git-tree-sha1 = "12713936cdc28a3442f61d92d782d5bd329ded7e" +deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"] +git-tree-sha1 = "31077f7f2845c8d8084a97e4e780c86d2b9a715f" uuid = "d934ef94-cdd4-4710-83d6-720549644b70" -version = "0.3.5" +version = "0.3.10" [[deps.ClimaCoupler]] -deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "OrdinaryDiffEq", "PkgDevTools", "Plots", "PrettyTables", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "TerminalLoggers", "Thermodynamics", "UnPack"] +deps = ["CLIMAParameters", "ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "ClimaLSM", "Dates", "DocStringExtensions", "Insolation", "JLD2", "NCDatasets", "OrdinaryDiffEq", "Plots", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "TempestRemap_jll", "TerminalLoggers", "Thermodynamics", "UnPack"] path = ".." uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7" version = "0.1.0" @@ -279,9 +277,9 @@ version = "0.3.3" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf" +git-tree-sha1 = "40edb50016a5db1a3862dd6e8f76e37c0fbf4f07" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.14" +version = "0.7.15" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -297,9 +295,9 @@ version = "0.14.0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -329,6 +327,12 @@ git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.10" +[[deps.CommonDataModel]] +deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf"] +git-tree-sha1 = "7f5717cbb2c1ce650cfd454451f282df33103596" +uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" +version = "0.2.5" + [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" @@ -367,9 +371,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] @@ -400,9 +404,9 @@ version = "4.1.1" [[deps.CubedSphere]] deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"] -git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f" +git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e" uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" -version = "0.2.3" +version = "0.2.4" [[deps.CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" @@ -477,9 +481,9 @@ version = "6.130.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e" +git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.33.0" +version = "2.33.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -513,18 +517,20 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" +version = "0.25.103" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -555,9 +561,9 @@ version = "1.0.4" [[deps.EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "3250001c57b9a3e18e1e5a257fb9ec2c012286c6" +git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.5.3" +version = "0.6.3" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -652,9 +658,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" +version = "1.7.0" weakdeps = ["SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -917,9 +923,9 @@ version = "0.14.7" [[deps.IntervalSets]] deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Statistics"] [deps.IntervalSets.extensions] @@ -936,16 +942,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.35" +version = "0.4.38" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -979,9 +985,9 @@ version = "0.4.1" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118" +git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.8" +version = "0.9.12" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1001,9 +1007,9 @@ version = "3.100.1+0" [[deps.LDLFactorizations]] deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "cbf4b646f82bfc58bb48bcca9dcce2eb88da4cd1" +git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.0" +version = "0.10.1" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1012,16 +1018,20 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.4.0" +weakdeps = ["BFloat16s"] + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.27+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1036,9 +1046,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" @@ -1061,9 +1071,9 @@ version = "0.16.1" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -1168,12 +1178,13 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" version = "2.5.2" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "84bdad5fb1fe03a6637ad413e0e4b7e48ac22be5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.9.2" +version = "2.16.2" [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveEnzymeExt = "Enzyme" @@ -1183,8 +1194,10 @@ version = "2.9.2" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -1194,6 +1207,7 @@ version = "2.9.2" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1221,16 +1235,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] SpecialFunctionsExt = "SpecialFunctions" +[[deps.MKL]] +deps = ["Artifacts", "Libdl", "LinearAlgebra", "MKL_jll"] +git-tree-sha1 = "100521a1d2181cb39036ee1a6955d6b9686bb363" +uuid = "33e6dc65-8f57-5167-99aa-e5a354878fb2" +version = "0.6.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" @@ -1238,10 +1258,10 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2023.2.0+0" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "9dc0c2c256d8b53324770738e54083622f2ca187" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.10" +version = "0.20.18" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1259,9 +1279,9 @@ version = "4.1.2+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] -git-tree-sha1 = "781916a2ebf2841467cda03b6f1af43e23839d85" +git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9" uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" -version = "0.1.9" +version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1290,10 +1310,10 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1307,9 +1327,9 @@ version = "0.3.2" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" +git-tree-sha1 = "b01beb91d20b0d1312a9471a36017b5b339d26de" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.4+0" +version = "10.1.4+1" [[deps.Missings]] deps = ["DataAPI"] @@ -1336,10 +1356,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.NCDatasets]] -deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "Printf"] -git-tree-sha1 = "17e39eb5bbe564f48bdbefbd103bd3f49fcfcb9b" +deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"] +git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.11.9" +version = "0.12.17" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1372,10 +1392,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" [[deps.NetCDF_jll]] -deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "7f5a03e6712f5447c9c344430b8d1927a4777483" +deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "072f8371f74c3b9e1b26679de7fbf059d45ea221" uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3" -version = "400.902.206+0" +version = "400.902.5+1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -1452,9 +1472,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.0" +version = "6.58.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1463,9 +1483,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c" +git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.25" +version = "0.11.28" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1507,17 +1527,11 @@ deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", " uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" version = "1.9.2" -[[deps.PkgDevTools]] -deps = ["Pkg", "REPL"] -git-tree-sha1 = "1309e483ca06a5d6d1997c0efc62694447947cd1" -uuid = "2afb0842-1d6c-4499-8b39-71b06199676f" -version = "0.1.0" - [[deps.PkgVersion]] deps = ["Pkg"] -git-tree-sha1 = "192aa02cc47f6566c7a1a8907dee76f6eb0a7c90" +git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" -version = "0.2.1" +version = "0.3.3" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1553,9 +1567,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1589,9 +1603,9 @@ version = "1.4.1" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.2.8" [[deps.Printf]] deps = ["Unicode"] @@ -1681,9 +1695,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1755,9 +1769,9 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] @@ -1779,15 +1793,15 @@ version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1815,9 +1829,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "4d53b83af904049c493daaf2a225bcae994a3c59" +git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.20" +version = "0.1.23" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveNNlibExt = "NNlib" @@ -1836,20 +1850,14 @@ git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" version = "1.1.0" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.0" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -1857,9 +1865,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" +git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" +version = "2.11.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2008,9 +2016,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2081,16 +2089,19 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.2" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -2109,9 +2120,9 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.0" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2354,15 +2365,15 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.4" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/test/Project.toml b/test/Project.toml index acd91714fd..0b2d2fc1c7 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -36,7 +36,7 @@ ClimaCoupler = "0.1" Downloads = "1" IntervalSets = "0.5, 0.6, 0.7" MPI = "0.20" -NCDatasets = "0.11, 0.12" +NCDatasets = "0.11, 0.12, 0.13" Pkg = "1" PrettyTables = "2" StaticArrays = "1"