From 0f7656ccf510c511d5b219dd7776b37a14596ef1 Mon Sep 17 00:00:00 2001 From: Beth Cimini Date: Tue, 1 Aug 2023 08:35:42 -0400 Subject: [PATCH] Update test_stardist.yml --- .github/workflows/test_stardist.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test_stardist.yml b/.github/workflows/test_stardist.yml index 350085e..da710f4 100644 --- a/.github/workflows/test_stardist.yml +++ b/.github/workflows/test_stardist.yml @@ -9,7 +9,7 @@ on: jobs: build_cellprofiler: - name: Build CellProfiler + name: Test CellProfiler-Stardist runs-on: ubuntu-latest steps: - uses: actions/checkout@v2 @@ -46,10 +46,10 @@ jobs: pip install wxPython-4.1.0-cp38-cp38-linux_x86_64.whl pip install --upgrade pip setuptools wheel pip install numpy + pip install git+https://github.com/CellProfiler/centrosome.git@cython3 - name: Run stardist plugin pipeline run: | - pip uninstall -y cellpose torch pip install -e .[stardist] python -m cellprofiler -c -r -p ./tests/headless_test/4.2.5_plugins_test_pipeline_STARDIST.cppipe -i ./tests/headless_test/test_pipeline_img -o . --plugins-directory=./active_plugins --log-level=DEBUG 2>&1 | tee logfile sh ./tests/headless_test/test_run.sh "module runstardist" logfile