singularity-gdc-client

Create image locally

To create the Singularity container, run the command

bash ./build.sh

Example

Notice the app name has no hyphen unlike the original tool. This is a workaround from an existing bug in Singularity 3+.

➜  singularity run --app gdc-client singularity-gdc-client.simg download 22a29915-6712-4f7a-8dba-985ae9a1f005

/tmp/_MEIlzeptb/cryptography/hazmat/primitives/constant_time.py:26: CryptographyDeprecationWarning: Support for your Python version is deprecated. The next version of cryptography will remove support. Please upgrade to a 2.7.x release that supports hmac.compare_digest as soon as possible.
100% [#############################################################################] Time: 0:00:01   3.16 MB/s
100% [#############################################################################] Time: 0:00:00 128.94 kB/s

Successfully downloaded: 1

Disclaimer

I am nothing but a humble programmer creating the container for this wonderful app.

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Copyleft © 2019 icaoberg at the Computational Biology Department in Carnegie Mellon University