From 229d2934c35de911c9294949730f62f17dc6906f Mon Sep 17 00:00:00 2001
From: jonasfreimuth <68993915+jonasfreimuth@users.noreply.github.com>
Date: Thu, 11 May 2023 16:14:18 +0200
Subject: [PATCH] Change jet color scale to turbo

Firstly this improves some of the shortcomings of the jet scale
(see
[here](https://ai.googleblog.com/2019/08/turbo-improved-rainbow-colormap-for.html)).
Secondly, this removes the need for the non-free `matlab` package.
---
 vignettes/TCGAWorkflow.Rmd | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/vignettes/TCGAWorkflow.Rmd b/vignettes/TCGAWorkflow.Rmd
index b1436dc..86c4fd7 100644
--- a/vignettes/TCGAWorkflow.Rmd
+++ b/vignettes/TCGAWorkflow.Rmd
@@ -1449,7 +1449,7 @@ ra = rowAnnotation(
 heatmap  <- Heatmap(
   matrix = assay(sig.met),
   name = "DNA methylation",
-  col = matlab::jet.colors(200),
+  col = viridisLite::turbo(200),
   show_row_names = FALSE,
   cluster_rows = TRUE,
   cluster_columns = FALSE,