environment.yml

name: crispr_identify_env
channels:
  - conda-forge
  - bioconda
  - nodefaults
  - biobuilds
  - r
  - axfeh
dependencies:
  - python==3.7.6
  - pip
  - python_abi=3.7
  - biopython=1.76
  - h5py=2.10.0
  - hdf5=1.10.6
  - hmmer=3.3
  - numpy==1.18.1
  - pandas=1.0.3
  - matplotlib=3.1.3
  - perl=5.26.2
  - perl-compress-bgzf=0.005
  - perl-threaded=5.26.0
  - perl-yaml=1.29
  - prodigal==2.6.3
  - dill=0.3.3
  - protobuf=3.13.0.1
  - regex=2019.03.09
  - pyasn1=0.4.8
  - pycparser=2.20
  - networkx=2.5
  - pyjwt=1.7.1
  - pyparsing=2.4.7
  - pyqt=5.9.2
  - pysocks=1.7.1
  - python-dateutil=2.8.1
  - pytz=2020.1
  - pyyaml=5.3.1
  - scikit-learn==0.22.1
  - scipy=1.4.1
  - anaconda::tensorflow==2.3.0
  - tensorboard==2.3.0
  - tensorboard-plugin-wit==1.6.0
  - viennarna==2.4.15
  - pyopenssl=22.0.0
  - certifi=2022.12.7
  - vmatch==2.3.0
  - clustalo==1.2.3
  - blast==2.5.0
  - keras==2.4.3
  - libffi=3.2.1
  - spacerplacer
  - pip:
    - python-Levenshtein