itkFDFImageIO.h

/*  Copyright (C) 2004 Glenn Pierce.
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Library General Public License for more details.
 *
 *  You should have received a copy of the GNU Library General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
 */

#ifndef __itkFDFImageIO_h
#define __itkFDFImageIO_h

#include "itkImageIOBase.h"

namespace itk
{

/* \brief ImageIO object for reading and writing FDF images
 *
 * \ingroup IOFilters
 *
 */
class ITK_EXPORT FDFImageIO : public ImageIOBase
{
public:
  /** Standard class typedefs. */
  typedef FDFImageIO   Self;
  typedef ImageIOBase  Superclass;
  typedef SmartPointer<Self>  Pointer;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(FDFImageIO, ImageIOBase);

  /*-------- This part of the interface deals with reading data. ------ */

  /** Determine the file type. Returns true if this ImageIO can read the
   * file specified. */
  bool CanReadFile(const char*) override;

  /** Set the spacing and diemention information for the set filename. */
  void ReadImageInformation() override;

  /** Get the type of the pixel.  */
  //virtual const itk::ImageIOBase::IOPixelType GetPixelType() const;

  /** Reads the data from disk into the memory buffer provided. */
  void Read(void* buffer) override;

  /** Reads 3D data from multiple files assuming one slice per file. */
  virtual void ReadVolume(void* buffer);

  /** Compute the size (in bytes) of the components of a pixel. For
   * example, and RGB pixel of unsigned char would have a
   * component size of 1 byte. */
  unsigned int GetComponentSize() const override;

  /*-------- This part of the interfaces deals with writing data. ----- */

  /** Determine the file type. Returns true if this ImageIO can read the
   * file specified. */
  bool CanWriteFile(const char*) override;

  /** Writes the spacing and dimentions of the image.
   * Assumes SetFileName has been called with a valid file name. */
  void WriteImageInformation() override;

  /** Writes the data to disk from the memory buffer provided. Make sure
   * that the IORegion has been set properly. */
  void Write(const void* buffer) override;

protected:
  FDFImageIO();
  ~FDFImageIO() override;
  void PrintSelf(std::ostream& os, Indent indent) const override;

  void WriteSlice(std::string& fileName, const void* buffer);

  int ReadHeader(const char *FileNameToRead);

private:
  FDFImageIO(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  void SwapBytesIfNecessary(void* buffer, unsigned long numberOfPixels);

  // Position after ReadImageInformation.
  size_t m_InputPosition;
  float *resolutions;

  std::string spatial_rank;
  std::string checksum;
  std::string storage;
  std::string bits;
  std::vector<int> matrix;
  std::vector<float> location;
  std::vector<float> span;
  std::vector<float> roi;
};

} // end namespace itk


#define RAISE_EXCEPTION()                               \
  {                                                     \
    ExceptionObject exception(__FILE__, __LINE__);      \
    exception.SetDescription("File cannot be read");    \
    throw exception;                                    \
  }

#endif