Can't Install with add GIRFReco on macos

[NCastro-FAU]

GIRFReco

Failed to precompile GIRFReco [cf1bd817-9e2d-403d-b1e7-15ef5a867bae] to "/Users/nyvenncastro/.julia/compiled/v1.11/GIRFReco/jl_efXXtk".
ERROR: LoadError: InitError: could not load symbol "fftw_init_threads":
dlsym(0x7ff906083aa0, fftw_init_threads): symbol not found
Stacktrace:
[1] fftw_init_threads
@ ~/.julia/packages/FFTW/6nZei/src/providers.jl:69 [inlined]
[2] init()
@ FFTW ~/.julia/packages/FFTW/6nZei/src/FFTW.jl:32
[3] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1336
[4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1324
[5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)
@ Base ./loading.jl:1213
[6] _include_from_serialized (repeats 2 times)
@ ./loading.jl:1169 [inlined]
[7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
@ Base ./loading.jl:1975
[8] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2435
[9] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2300
[10] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[11] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2287
[13] macro expansion
@ ./loading.jl:2226 [inlined]
[14] macro expansion
@ ./lock.jl:273 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2183
[16] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[17] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[18] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2176
[19] include
@ ./Base.jl:557 [inlined]
[20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2806
[21] top-level scope
@ stdin:4
during initialization of module FFTW
in expression starting at /Users/nyvenncastro/.julia/packages/FourierTools/870fh/src/FourierTools.jl:1
in expression starting at stdin:4
ERROR: LoadError: Failed to precompile FourierTools [b18b359b-aebc-45ac-a139-9c0ccbb2871e] to "/Users/nyvenncastro/.julia/compiled/v1.11/FourierTools/jl_4PdU8B".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64})
@ Base ./loading.jl:3089
[3] (::Base.var"#1081#1082"{Base.PkgId})()
@ Base ./loading.jl:2477
[4] mkpidlock(f::Base.var"#1081#1082"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1056 [inlined]
[8] invokelatest
@ ./essentials.jl:1051 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1081#1082"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3613
[10] maybe_cachefile_lock
@ ./loading.jl:3610 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2473
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2300
[13] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2287
[16] macro expansion
@ ./loading.jl:2226 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2183
[19] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2176
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2806
[24] top-level scope
@ stdin:4
in expression starting at /Users/nyvenncastro/.julia/packages/GIRFReco/7Na3s/src/GIRFReco.jl:1
in expression starting at stdin:

any idea how to fix this?
My hunch is that we need to use deprecated versions of some of the packages.

[alexjaffray]

Hi @NCastro-FAU , thanks for bringing this up. It seems like FourierTools is failing to compile, not GIRFReco. It looks like you were using the latest Julia version on the day it came out, and I am wondering if the behaviour still happens now.

[NCastro-FAU]

Hi, First of all, thank you for your attention in this matter. Since that day I have not tried it yet but I will do it in the end of the day and I shall inform you if the behaviour still happens. Would you recommend downgrading Julia ? Kind Regards, Nyvenn de Castro No dia 14/11/2024, às 19:32, Alexander Jaffray ***@***.***> escreveu: if the behaviour still happen